View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7257_low_29 (Length: 251)
Name: NF7257_low_29
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18047206 - 18046967
Alignment:
| Q |
1 |
ttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatca |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18047206 |
ttcaagcttagaacaatcagcaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatca |
18047107 |
T |
|
| Q |
101 |
atatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaagg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18047106 |
atatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaagg |
18047007 |
T |
|
| Q |
201 |
aaaaaacatctgactgaagcaaacgattgcttgcattcat |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
18047006 |
aaaaaacatctgactgaagcaaacgattgcttgcattcat |
18046967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 18033947 - 18034183
Alignment:
| Q |
1 |
ttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18033947 |
ttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatca |
18034046 |
T |
|
| Q |
101 |
atatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18034047 |
atatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaagg |
18034146 |
T |
|
| Q |
201 |
aaaaaacatctgactgaagcaaacgattgcttgcatt |
237 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
18034147 |
aaaaatcatctgactgaagcaaacgattgcttgcatt |
18034183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4398120 - 4398359
Alignment:
| Q |
1 |
ttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4398120 |
ttcaagcttagaacaatcagcaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatca |
4398219 |
T |
|
| Q |
101 |
atatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaagg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4398220 |
atatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaagg |
4398319 |
T |
|
| Q |
201 |
aaaaaacatctgactgaagcaaacgattgcttgcattcat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4398320 |
aaaaaacatctgactgaagcaaacgattgcttgcattcat |
4398359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4498522 - 4498283
Alignment:
| Q |
1 |
ttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4498522 |
ttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatca |
4498423 |
T |
|
| Q |
101 |
atatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4498422 |
atatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaagg |
4498323 |
T |
|
| Q |
201 |
aaaaaacatctgactgaagcaaacgattgcttgcattcat |
240 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
4498322 |
aaaaaacatctgactgaagaaaacgattgcttgcattcat |
4498283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4519582 - 4519346
Alignment:
| Q |
1 |
ttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4519582 |
ttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatca |
4519483 |
T |
|
| Q |
101 |
atatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaagg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4519482 |
atatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaagg |
4519383 |
T |
|
| Q |
201 |
aaaaaacatctgactgaagcaaacgattgcttgcatt |
237 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
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|
| T |
4519382 |
aaaaatcatctgactgaagcaaacgattgcttgcatt |
4519346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 4529766 - 4529533
Alignment:
| Q |
5 |
agcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatcaatat |
104 |
Q |
| |
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|||| ||||||||||||||||||||||||||| | |||| |||||||||||||| ||| ||||||| | |||||||| | || |||||||||||||| |
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| T |
4529766 |
agctcagaacaatcagaaagttttagagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagtacaatactctttgatagatcaatat |
4529667 |
T |
|
| Q |
105 |
atcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaa |
204 |
Q |
| |
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|||| | ||||||||| ||||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
4529666 |
atctcagatgcttcatctcttcaatactatttgggattgccagaatattcaatccacaaagtgtcaacacacgtaagaactttaagcctgaaaaggaaag |
4529567 |
T |
|
| Q |
205 |
aacatctgactgaagcaaacgattgcttgcattc |
238 |
Q |
| |
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||| | ||||||| ||| | ||||||||||||| |
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|
| T |
4529566 |
aacgtttgactgacgcagataattgcttgcattc |
4529533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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