View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7257_low_3 (Length: 594)
Name: NF7257_low_3
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_low_3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 536; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 14 - 594
Target Start/End: Original strand, 50392926 - 50393506
Alignment:
| Q |
14 |
ccattggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcctttctgatcatggcagc |
113 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50392926 |
ccattggtgttcacggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcctttcttatcatggcagc |
50393025 |
T |
|
| Q |
114 |
agccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctccttagtcttttcaaagat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50393026 |
agccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctccttagttttttcaaagat |
50393125 |
T |
|
| Q |
214 |
tttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatactaaacttttttggttact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393126 |
tttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatactaaacttttttggttact |
50393225 |
T |
|
| Q |
314 |
ttatgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaa |
413 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393226 |
ttatgatttggttatcagtcaccaaaaaaatagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaa |
50393325 |
T |
|
| Q |
414 |
cactggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcgcggttttgggaattcttaaaggctatgttggtcttagtggtgcaataatc |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50393326 |
cactggttcacttgtgacttgtgttaagaatttccctgaatctcgcggagcggttttgggaattcttaaaggttatgttggtcttagtggtgcaataatc |
50393425 |
T |
|
| Q |
514 |
acacagctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttct |
594 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393426 |
acacagctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttct |
50393506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 14 - 593
Target Start/End: Original strand, 50384507 - 50385086
Alignment:
| Q |
14 |
ccattggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcctttctgatcatggcagc |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |
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| T |
50384507 |
ccattggtgttcatggtttgggagacatgaagagtctcaccgtccaattcatcaccgggcgttggttcgtcatttttgcctcctttctaatcatggcagc |
50384606 |
T |
|
| Q |
114 |
agccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctccttagtcttttcaaagat |
213 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
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| T |
50384607 |
agccggagccacctacatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagtacactgaacctccttagttttttcaaagac |
50384706 |
T |
|
| Q |
214 |
tttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatactaaacttttttggttact |
313 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || || || |||||||||| |
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| T |
50384707 |
tttggtagcaacgttggtgtcctttcaggactaatcaacgaactctatccaccttgggtagttttgacaataggtgctattctcaatttctttggttact |
50384806 |
T |
|
| Q |
314 |
ttatgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaa |
413 |
Q |
| |
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| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50384807 |
tcatgatttggttatcagttaccaaaaaaatagcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaa |
50384906 |
T |
|
| Q |
414 |
cactggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcgcggttttgggaattcttaaaggctatgttggtcttagtggtgcaataatc |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
50384907 |
cactggttcacttgtgacttgtgttaagaatttccctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtctcagtggtgcaatcatc |
50385006 |
T |
|
| Q |
514 |
acacagctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttc |
593 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50385007 |
acacagctttactctgctatttattatgatgacacaaaggctttgattttgtttattggttggcttcctgctgctatttc |
50385086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 593
Target Start/End: Original strand, 50389654 - 50390231
Alignment:
| Q |
16 |
attggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcctttctgatcatggcagcag |
115 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||| | || | |
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| T |
50389654 |
attggtgttcatgattggggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctg |
50389753 |
T |
|
| Q |
116 |
ccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctccttagtcttttcaaagattt |
215 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
50389754 |
ccggagccacctacatgttcggtctatactccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattt |
50389853 |
T |
|
| Q |
216 |
tggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatactaaacttttttggttacttt |
315 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||| || || ||||||||||| |
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| T |
50389854 |
tggtagcaatgttggtatccttgcaggactaatcaacgaaatctctccaccttgggtagttttagcaataggtgctatacttaatttctttggttacttc |
50389953 |
T |
|
| Q |
316 |
atgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaaca |
415 |
Q |
| |
|
|||||||||||||| | || | ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50389954 |
atgatttggttatccataacaaaaaaaattgcaagaccacatgtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaaca |
50390053 |
T |
|
| Q |
416 |
ctggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcgcggttttgggaattcttaaaggctatgttggtcttagtggtgcaataatcac |
515 |
Q |
| |
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| ||||||||||| |||||||||||||||||||| |||||||| || || |||||||||||||| ||||| ||| |||||||||||||||| || ||||| |
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| T |
50390054 |
ccggttcacttgttacttgtgttaagaatttccccgaatctcgcggagctgttttgggaattctaaaaggatatcttggtcttagtggtgctatcatcac |
50390153 |
T |
|
| Q |
516 |
acagctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttc |
593 |
Q |
| |
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||| ||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
50390154 |
acaactttactctgctatttattataatgactcaaaggctttgattttgcttataggttggcttcctgccgctatttc |
50390231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 64 - 593
Target Start/End: Original strand, 50406589 - 50407118
Alignment:
| Q |
64 |
atcaccggacggtggttcgtcatttttgcctcctttctgatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaa |
163 |
Q |
| |
|
||||| ||||| |||||||| | ||||| || ||||| |||||| |||| | ||||||||||||||||||||||| ||||| | |||||||||| |
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| T |
50406589 |
atcacaggacgatggttcgtggtgtttgcttcttttctaatcatgtcagcttcaggagccacctacatgtttggtctttactctagtaccataaaaacat |
50406688 |
T |
|
| Q |
164 |
cacttggctatgaccaaagcacactaaacctccttagtcttttcaaagattttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatcc |
263 |
Q |
| |
|
| | | ||||||||||| || || |||||||||||| | |||||||| || ||| ||||| ||||||| | | || || |||| ||| || || |
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| T |
50406689 |
ccttagcctatgaccaaacaactcttaacctccttagtttcttcaaagacttaggtggcaaccttggtgttttctctggcttaatcaatgaaatcacacc |
50406788 |
T |
|
| Q |
264 |
accttgggtagttttaacaataggtgctatactaaacttttttggttactttatgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttgg |
363 |
Q |
| |
|
||||| || ||| | |||| ||| | | || ||||| ||||||||||||||||| |||||| |||| || || ||| ||| ||||||||| |
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| T |
50406789 |
accttatgttgttcttgcaattggttcccttcttaacttctttggttactttatgatatggttagcagtgactaaaaaaataccaaaaccgaaagtttgg |
50406888 |
T |
|
| Q |
364 |
caaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcg |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||||| | |
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| T |
50406889 |
caaatgtgtctttacatttgtataggtgctaattctcagtctttttcaaacactggttcacttgttacttgtgttaagaatttccccgaaactcgtggtg |
50406988 |
T |
|
| Q |
464 |
cggttttgggaattcttaaaggctatgttggtcttagtggtgcaataatcacacagctttactctgctatttactatgatgacacaaaggctttgatttt |
563 |
Q |
| |
|
|| ||||| ||| | ||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||| | ||||||| |||| ||||||||||| |
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| T |
50406989 |
ttgtgttggggattttaaaaggttatgttggtcttagtggtgctattatcacacaactttattctgctatttattttgatgacccaaaagctttgatttt |
50407088 |
T |
|
| Q |
564 |
gtttataggttggcttcctgctgctatttc |
593 |
Q |
| |
|
| |||| | ||||||||| ||||| ||||| |
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| T |
50407089 |
gcttattgcttggcttccagctgcaatttc |
50407118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 472 - 579
Target Start/End: Original strand, 24223903 - 24224010
Alignment:
| Q |
472 |
ggaattcttaaaggctatgttggtcttagtggtgcaataatcacacagctttactctgctatttactatgatgacacaaaggctttgattttgtttatag |
571 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
24223903 |
ggaattcttaaatgttatgttggtcttagtggtgcaatcatcacacaactttactctgctatttattatgatgacacaaaggctttgattttgttcataa |
24224002 |
T |
|
| Q |
572 |
gttggctt |
579 |
Q |
| |
|
| |||||| |
|
|
| T |
24224003 |
gctggctt |
24224010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 450
Target Start/End: Original strand, 41333948 - 41334043
Alignment:
| Q |
355 |
aaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccct |
450 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| |||||||| ||||| | ||||| ||| | | || ||||||||||||||||||||| |
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| T |
41333948 |
aaagtttggcaaatgtgtctttatatttgcattggtgcaaattctcaaacttttactaacacaggtgctttagttacttgtgttaagaatttccct |
41334043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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