View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7257_low_4 (Length: 570)
Name: NF7257_low_4
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 36 - 305
Target Start/End: Original strand, 40482132 - 40482400
Alignment:
| Q |
36 |
ttaaagataaaagtgactaatcatgacttgaagttttgaaaccccacccgactcattgcttatacaatcaatttgtctttaaactatcacattttcatca |
135 |
Q |
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| T |
40482132 |
ttaaagataaaagtggctaatcatgacttgaagttttgaaaccccacccgagtcattgcttatacaatcaatttgtctttaaactatcacattttcatca |
40482231 |
T |
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| Q |
136 |
atttaatccctaaactaataaaatcaacaaaaaatgnnnnnnnnnnaagaacaaaaaaggttcttaaattatagaaatggcatcaacggaggtagttcgt |
235 |
Q |
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| T |
40482232 |
atttaatccctaaactaataaaatcaacaaaaaatg-ttttttcttaagaacaaaaaaggttcttaaattatagaaatggcatcaacggaggtagttcgt |
40482330 |
T |
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| Q |
236 |
tcaatagttgcttgactctagctcacacgacacttgtaagtcaatgacctcaaatttgatattttgttac |
305 |
Q |
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| T |
40482331 |
tcaatagttgcttgactctagctcacacgacacttgtaagtcaatgatctcaaatttgatattttgttac |
40482400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 366 - 555
Target Start/End: Original strand, 40482502 - 40482691
Alignment:
| Q |
366 |
agtatttaaccccaagcaccttccaagaaatatatcatgtgtgaagtaaagtggtcgtttgtaatttgtattgtaataccttccacactatccacagtac |
465 |
Q |
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| T |
40482502 |
agtatttaaccccaagcaccttccaagaaatatatcatgtgtgaagtaaagtggtcgtttgtaatttgtattgtaataccttccacactatccacagtac |
40482601 |
T |
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| Q |
466 |
aaaatatactcaatgcatttttgtggttatacttttatcgttactttcagacctgatcacctaaattggaacccatgaatgaaacttcat |
555 |
Q |
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| T |
40482602 |
aaaatatactcaatgtatttttgtggttatacttttatcgttactctcagacctgatcacctaaattggaacccatgaatgaaacttcat |
40482691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 230 - 356
Target Start/End: Original strand, 40492783 - 40492913
Alignment:
| Q |
230 |
gttcgttcaatagttgcttgactctagctcacacgacacttgtaagtcaatgacctc-aaatttgatattttgttactatgaatttatccaatataaaa- |
327 |
Q |
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| T |
40492783 |
gttcgttcaatagttgcttgactctagctcacacgacacttgtaagtctacgatgtcaaaatttgatattttattacactgaattcatccaatataaaaa |
40492882 |
T |
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| Q |
328 |
--gttacgaaaacataaaactaattaagtat |
356 |
Q |
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| T |
40492883 |
attttaagaaaacataaaacgaattaagtat |
40492913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 40482396 - 40482437
Alignment:
| Q |
328 |
gttacgaaaacataaaactaattaagtatgtaaaaaatagta |
369 |
Q |
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| T |
40482396 |
gttacgaaaacataaaactaattaagtatgtaaaaaatagta |
40482437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 40492590 - 40492699
Alignment:
| Q |
53 |
taatcatgacttgaagttttgaaaccccacccgactcattgcttatacaa-tcaatttgtctttaaacta---tcacattttcatcaatttaatccctaa |
148 |
Q |
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| T |
40492590 |
taatcataacttgaagttttgaacctgcagttgaataattgcttatacaaatcaatttgtctttaaactactatcacactttgatcaatttaatccataa |
40492689 |
T |
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| Q |
149 |
actaataaaa |
158 |
Q |
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| T |
40492690 |
actaataaaa |
40492699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 40492708 - 40492752
Alignment:
| Q |
185 |
aacaaaaaaggttcttaaattatagaaatggcatcaacggaggta |
229 |
Q |
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| T |
40492708 |
aacaaaaaaggttcttcaattatagaaattgcatcaacggtggta |
40492752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 448
Target Start/End: Original strand, 40494070 - 40494102
Alignment:
| Q |
416 |
gtggtcgtttgtaatttgtattgtaataccttc |
448 |
Q |
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| T |
40494070 |
gtggtcgtttgtaatttgtattgtaataccttc |
40494102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 14403259 - 14403311
Alignment:
| Q |
117 |
aactatcacattttcatcaatttaatccctaaactaataaaatcaacaaaaaa |
169 |
Q |
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| T |
14403259 |
aactatcaccatttcatcaatttcgtccttaaactaataaaatcaactaaaaa |
14403311 |
T |
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