View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7257_low_6 (Length: 509)
Name: NF7257_low_6
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 18047206 - 18047701
Alignment:
| Q |
1 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattgacatgtatgccacgggggttaggacagttgactgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
18047206 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattgagatgtatgccacgggggctaggacagttgactgat |
18047305 |
T |
|
| Q |
101 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaagctaaacaacctgagagggagattagaattaaaagggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18047306 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaggctaaacaacctgagagggagattagaattaaaagggt |
18047405 |
T |
|
| Q |
201 |
tgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaacaccttcaacaattggaattgcgatggaatcatgtcga |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
18047406 |
tgaatttcctgcgaaataatgctgcagagattgaatctgcaaaagtacttgttgagaagcgacaccttcaacatttggaattacgatggaatcatgtcga |
18047505 |
T |
|
| Q |
301 |
ccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagcca---caccattcgcttcaaaaactagttatagatgggttttgcggcaaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
18047506 |
ccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgcggcagc |
18047605 |
T |
|
| Q |
398 |
aagttaccagactggatatgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcgggaagtgtgtaacctt |
493 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
18047606 |
aggttaccagactggatatggaatctctcatcgctcttgactcttgagatccacaattgcaatagtttgacattactgccggaagtgtgtaacctt |
18047701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 18033947 - 18033647
Alignment:
| Q |
1 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattgacatgtatgccacgggggttaggacagttgactgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
18033947 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagtttgacatgtatgccacgtgggctaggacagttgactgat |
18033848 |
T |
|
| Q |
101 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaagctaaacaacctgagagggagattagaattaaaagggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18033847 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttgggtgagctaaacaacctgagagggagattagaattaaaagggt |
18033748 |
T |
|
| Q |
201 |
tgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaacaccttcaacaattggaattgcgatggaatcatgtcga |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18033747 |
tgaatttcctgcgaaataatgctgaaaagattgaatctgcaaaagtacttcttgagaagcgacaccttcaacaattggaattgcgatggaatcatgtcga |
18033648 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
|
| |
|
|
| T |
18033647 |
c |
18033647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 319 - 476
Target Start/End: Complemental strand, 18033599 - 18033439
Alignment:
| Q |
319 |
ggaagatgagatcattttacaaggcctgcagccacaccat---tcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
415 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || |||| |||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
18033599 |
ggaagatgagatcatttttctaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgtggcagcaggttaccagactggatg |
18033500 |
T |
|
| Q |
416 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgc |
476 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18033499 |
tggaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgc |
18033439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 4398120 - 4397625
Alignment:
| Q |
1 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattgacatgtatgccacgggggttaggacagttgactgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
4398120 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattgagatgtatgccacgggggctaggacagttgactgat |
4398021 |
T |
|
| Q |
101 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaagctaaacaacctgagagggagattagaattaaaagggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398020 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaggctaaacaacctgagagggagattagaattaaaagggt |
4397921 |
T |
|
| Q |
201 |
tgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaacaccttcaacaattggaattgcgatggaatcatgtcga |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
4397920 |
tgaatttcctgcgaaataatgctgcagagattgaatctgcaaaagtacttgttgagaagcgacaccttcaacatttggaattacgatggaatcatgtcga |
4397821 |
T |
|
| Q |
301 |
ccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagccac---accattcgcttcaaaaactagttatagatgggttttgcggcaaa |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
4397820 |
ccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgcggcagc |
4397721 |
T |
|
| Q |
398 |
aagttaccagactggatatgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcgggaagtgtgtaacctt |
493 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
4397720 |
aggttaccagactggatatggaatctctcatcgctcttgactcttgagatccacaattgcaatagtttgacattactgccggaagtgtgtaacctt |
4397625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 4498522 - 4498822
Alignment:
| Q |
1 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattgacatgtatgccacgggggttaggacagttgactgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
4498522 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagtttgacatgtatgccatgtgggctaggacagttgactgat |
4498621 |
T |
|
| Q |
101 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaagctaaacaacctgagagggagattagaattaaaagggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498622 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttgggtgagctaaacaacctgagagggagattagaattaaaagggt |
4498721 |
T |
|
| Q |
201 |
tgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaacaccttcaacaattggaattgcgatggaatcatgtcga |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498722 |
tgaatttcctgcgaaataatgctgaaaagattgaatctgcaaaagtacttcttgagaagtgacaccttcaacaattggaattgcgatggaatcatgtcga |
4498821 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
|
| |
|
|
| T |
4498822 |
c |
4498822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 4519582 - 4519882
Alignment:
| Q |
1 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattgacatgtatgccacgggggttaggacagttgactgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
4519582 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagtttgacatgtatgccacgtgggctaggacagttgactgat |
4519681 |
T |
|
| Q |
101 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaagctaaacaacctgagagggagattagaattaaaagggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4519682 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttgggtgagctaaacaacctgagagggagattagaattaaaagggt |
4519781 |
T |
|
| Q |
201 |
tgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaacaccttcaacaattggaattgcgatggaatcatgtcga |
300 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4519782 |
tgaagttcctgcgaaataatgctgcagagattgaatctgcaaaagtacttgttgagaagcgacaccttcaacaattggaattgcgatggaatcatgtcga |
4519881 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
|
| |
|
|
| T |
4519882 |
c |
4519882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 4529770 - 4530051
Alignment:
| Q |
1 |
aatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattgacatgtatgccacgggggttaggacagttgactgat |
100 |
Q |
| |
|
|||||| |||||||||||||| | |||||| |||||||||||||| |||||||| |||||||||| ||||||||||| ||||||| ||||||| | || |
|
|
| T |
4529770 |
aatattaccagaaaatctcaacaaaagtcttaggcatcttgagttgaatggttgtgagagattgagatgtatgccacaagggttagtacagttggttaat |
4529869 |
T |
|
| Q |
101 |
cttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaagctaaacaacctgagagggagattagaattaaaagggt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||||||| | ||||||||||| | | ||||||||||||| ||||| ||||||||| ||||| ||| |
|
|
| T |
4529870 |
cttcaaacactgacactttttgtactgaacaatagaagtacgaacgtaaatgagttaggtgagctaaacaaccttagaggaagattagaaataaaaaggt |
4529969 |
T |
|
| Q |
201 |
tgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaacaccttcaacaattggaatt |
282 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||||||| || ||||||||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
4529970 |
tggatttcctgcgaaacgctgctgcagagattgaatttgtaaaagtacttcttgagaaggaacaccttcagctattggaatt |
4530051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 319 - 473
Target Start/End: Original strand, 4519957 - 4520114
Alignment:
| Q |
319 |
ggaagatgagatcattttacaaggcctgcagccacacca---ttcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4519957 |
ggaagatgagatcattttacaaggcctgcagccacaccaccattcacttcgaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
4520056 |
T |
|
| Q |
416 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcac |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4520057 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcagtagtttgacatcac |
4520114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 319 - 476
Target Start/End: Original strand, 4530142 - 4530299
Alignment:
| Q |
319 |
ggaagatgagatcattttacaaggcctgcagccacaccattcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggatatgt |
418 |
Q |
| |
|
||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4530142 |
ggaagatgagaagattttagaaggtctgcagccacaccattcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggataggg |
4530241 |
T |
|
| Q |
419 |
aatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgc |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4530242 |
aatctctcatcgctcttgactcttgagttccacaattgcaatggtttgacatcactgc |
4530299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 319 - 476
Target Start/End: Original strand, 4498870 - 4499030
Alignment:
| Q |
319 |
ggaagatgagatcattttacaaggcctgcagccacaccat---tcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
415 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || |||| |||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
4498870 |
ggaagatgagatcatttttctaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgtggcagcaggttaccagactggatg |
4498969 |
T |
|
| Q |
416 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgc |
476 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498970 |
tggaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgc |
4499030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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