View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7257_low_8 (Length: 504)

Name: NF7257_low_8
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7257_low_8
NF7257_low_8
[»] chr8 (1 HSPs)
chr8 (12-504)||(37347254-37347758)
[»] chr5 (3 HSPs)
chr5 (148-441)||(24153381-24153686)
chr5 (48-124)||(24153719-24153794)
chr5 (210-259)||(24904335-24904384)
[»] chr6 (2 HSPs)
chr6 (148-453)||(26670891-26671208)
chr6 (148-453)||(26673419-26673736)
[»] chr3 (5 HSPs)
chr3 (270-504)||(39220083-39220317)
chr3 (57-241)||(39220325-39220509)
chr3 (343-451)||(45146402-45146510)
chr3 (185-281)||(45146248-45146351)
chr3 (45-110)||(45146121-45146185)
[»] chr2 (1 HSPs)
chr2 (148-453)||(1300236-1300553)
[»] chr7 (1 HSPs)
chr7 (343-497)||(7599211-7599365)
[»] chr1 (1 HSPs)
chr1 (12-87)||(48621509-48621585)


Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 12 - 504
Target Start/End: Complemental strand, 37347758 - 37347254
Alignment:
Q  12 aacctgtgtagctgccaatcgtgcattacaacacataacagaactacaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagca 111  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37347758 aacctgtgtagctgccgatcgtgcattacaacacataacagaactacaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagca 37347659  T
Q  112 ccgcgagaatcaagctctttagcacaaggcttattaaccattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattctaaacatcctaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37347658 ccgcgagaatcaagctctttagcacaaggcttattaaccattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattctaaacatcctaa 37347559  T
Q  212 gaacagaattaggacttgaaggcatagcattaacatttg------------aattaacatttaccactcttttctgacactgcaaaagttgacaagcaaa 299  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37347558 gaacagaattaggacttgaaggcatagcattaacatttgcattagcatttgaattaacatttaccactcttttctgacactgcaaaagttgacaagcaaa 37347459  T
Q  300 acccatgttaggatttgtaacaccacgagcattcttgacataatgaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37347458 acccatgttaggatttgtaacaccacgagcattcttgacataatgaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaa 37347359  T
Q  400 gaggttgatctagaaacaccttgacaacaatgaacaagaacacgaccaccttgtaatctaacatcctcaaaataatcaaaaacatcatacaaaatacttg 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37347358 gaggttgatctagaaacaccttgacaacaatgaacaagaacacgaccaccttgtaatctaacatcctcaaaataatcaaaaacatcatacaaaatacttg 37347259  T
Q  500 ttata 504  Q
    |||||    
T  37347258 ttata 37347254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 148 - 441
Target Start/End: Complemental strand, 24153686 - 24153381
Alignment:
Q  148 accattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattcta-aacatcctaagaacagaattaggacttgaaggcatagcattaaca 246  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||    
T  24153686 accattttaggtaccaaatgaagagggtcataaggtgaatgaggagccattctataacatccgaagaacataattaggacttgaaggcatagcattagca 24153587  T
Q  247 tttg------aattaacatttaccactcttttctgacactgcaaaagttgacaagcaaaacccatgttaggatttgtaacaccacgagcattcttgacat 340  Q
    ||||      |||| |||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||   | | | ||||||||| ||||    
T  24153586 tttgcacttcaatttacatttactactcttttctaacactgtaaaagttgacaagc-aaacccatgttaggatttgt---agcgcaagcattcttcacat 24153491  T
Q  341 aa---------tgaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaatg 431  Q
    ||         |||||||||||||||| | | ||||||| ||||||||| ||||||||||| || |||||| ||||| ||||||||||||| ||||||||    
T  24153490 aatattgaaattgaaaagcatcttcaagggtctgtccttttctccacatgagataagcaatgacaaaagagtttgatttagaaacaccttgtcaacaatg 24153391  T
Q  432 aacaagaaca 441  Q
    || |||||||    
T  24153390 aataagaaca 24153381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 24153794 - 24153719
Alignment:
Q  48 aacagaactacaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagcaccgcgagaatcaa 124  Q
    ||||||||||||| |||||| |||||||||||||||||||||||  |||| |||| |||||||||| ||||||||||    
T  24153794 aacagaactacaaattttac-aatccaaacatatatagcagaagaaacattaacagtaaaagcaccacgagaatcaa 24153719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 24904384 - 24904335
Alignment:
Q  210 aagaacagaattaggacttgaaggcatagcattaacatttgaattaacat 259  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||| ||||    
T  24904384 aagaacataattaggacttgaaggcatagtattaacatttaaatttacat 24904335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 148 - 453
Target Start/End: Complemental strand, 26671208 - 26670891
Alignment:
Q  148 accattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattcta-aacatcctaagaacagaattaggacttgaaggcatagcattaaca 246  Q
    ||||||||||| ||||||| ||||||  ||| |||||||||||| |||||| || ||||||| ||||||| || |||||||||||||| |||||||||||    
T  26671208 accattttaggcaccaaattaagagggccattaggtgaatgaggagccattttataacatcccaagaacataaataggacttgaaggc-tagcattaaca 26671110  T
Q  247 tttg------aattaacatttaccactcttttctgacact-gcaaaagttgacaagcaaaacccatgttaggatttgtaacaccacgagcattcttgaca 339  Q
    ||||      |||| |||||||| |||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||   |||||||||| |||    
T  26671109 tttgcatttgaatttacatttacaactcttttctgacacttgtaaaatttgacaagcaaaatccatgttaggatttgtaacac---gagcattcttcaca 26671013  T
Q  340 taat---------gaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaat 430  Q
    ||||         ||||||||||||||||  ||||||||| |||| ||| | |||||||||| || ||||||||||||||||||| |||||| |||||||    
T  26671012 taatattgaaattgaaaagcatcttcaaatatttgtccttttctctacaga-gataagcaatgacaaaagaggttgatctagaaataccttgtcaacaat 26670914  T
Q  431 gaacaagaacacgaccaccttgt 453  Q
    ||||||||||| |||||||||||    
T  26670913 gaacaagaacaagaccaccttgt 26670891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 148 - 453
Target Start/End: Complemental strand, 26673736 - 26673419
Alignment:
Q  148 accattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattcta-aacatcctaagaacagaattaggacttgaaggcatagcattaaca 246  Q
    ||||||||||| ||| ||| ||||||  ||| |||||||||||| |||||| || ||||||| ||||||| || |||||||||||||| |||||||||||    
T  26673736 accattttaggcacccaattaagagggccattaggtgaatgaggggccattttataacatcccaagaacataaataggacttgaaggc-tagcattaaca 26673638  T
Q  247 tttg------aattaacatttaccactcttttctgacact-gcaaaagttgacaagcaaaacccatgttaggatttgtaacaccacgagcattcttgaca 339  Q
    ||||      |||| |||||||| |||||||||| ||||| | |||| ||||||||||||| |||||||||||||||||||||   |||||||||| |||    
T  26673637 tttgcatttgaatttacatttacaactcttttctaacacttgtaaaatttgacaagcaaaatccatgttaggatttgtaacac---gagcattcttcaca 26673541  T
Q  340 taat---------gaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaat 430  Q
    ||||         ||||||||||||||||  ||||||||| |||| ||| | |||||||||| || ||||||||||||||||||| |||||| |||||||    
T  26673540 taatattgaaattgaaaagcatcttcaaatatttgtccttttctctacaga-gataagcaatgacaaaagaggttgatctagaaataccttgtcaacaat 26673442  T
Q  431 gaacaagaacacgaccaccttgt 453  Q
    ||||||||||| |||||||||||    
T  26673441 gaacaagaacaagaccaccttgt 26673419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 270 - 504
Target Start/End: Complemental strand, 39220317 - 39220083
Alignment:
Q  270 tttctgacactgcaaaagttgacaagcaaaacccatgttaggatttgtaacaccacgagcattcttgacataatgaaaagcatcttcaaagctttgtcct 369  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||| || || |  ||| | || ||| | |||||||||||||||||||| |||||     
T  39220317 tttctgacactgcaagagttgacaagcaaaacccatgtttggatttgtgactccccttgcagttttaacaaactgaaaagcatcttcaaagctctgtccc 39220218  T
Q  370 tctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaatgaacaagaacacgaccaccttgtaatctaacatcctcaa 469  Q
    |  |||||||| |||||||| || |||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  39220217 ttcctccacatgagataagctatcaccaaagccgttgatcgcgaaaccccttgacaacaatgaacaagaacacgaccaccttgttctctaacatcctcaa 39220118  T
Q  470 aataatcaaaaacatcatacaaaatacttgttata 504  Q
    | |||||||| |||||||| | |||||||||||||    
T  39220117 agtaatcaaacacatcatagagaatacttgttata 39220083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 39220509 - 39220325
Alignment:
Q  57 acaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagcaccgcgagaatcaagctctttagcacaaggcttattaaccatttta 156  Q
    ||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| || ||||||||  ||   | ||  || |  |||||||| |||    
T  39220509 acaatttttcccaatccacacatagatagcagaaggaacatgaacaataaaagcaccacgcgaatcaagtgctagtgaacctggttggttaaccatctta 39220410  T
Q  157 ggtaccaaatgaagaggatcataaggtgaatgaggtgccattctaaacatcctaagaacagaattaggacttgaaggcatagcat 241  Q
    || || | ||||||||| |||||||| || ||||| ||||||| | ||||||| | ||||||||||||||||| |||||||||||    
T  39220409 ggaacaagatgaagagggtcataaggagagtgaggagccattcgatacatccttaaaacagaattaggacttgcaggcatagcat 39220325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 451
Target Start/End: Original strand, 45146402 - 45146510
Alignment:
Q  343 tgaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaatgaacaagaacac 442  Q
    ||||||||||| | |||||| ||||||| ||||||||||||||||||||| || ||||||||||||||  ||| |||||| |||||  |||||||||||     
T  45146402 tgaaaagcatccttaaagctctgtccttttctccacataagataagcaatgacaaaagaggttgatctccaaataccttgtcaacatagaacaagaacaa 45146501  T
Q  443 gaccacctt 451  Q
    || ||||||    
T  45146502 gatcacctt 45146510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 45146248 - 45146351
Alignment:
Q  185 aatgaggtgccattcta-aacatcctaagaacagaattaggacttgaaggcatagcattaacatttg------aattaacatttaccactcttttctgac 277  Q
    ||||||| ||||||||| |||||||| |||||| |||||||||||||||||||| | ||| ||||||      |||| |||||||| |||||||||||||    
T  45146248 aatgaggagccattctataacatcctgagaacataattaggacttgaaggcataactttagcatttgcacttaaatttacatttactactcttttctgac 45146347  T
Q  278 actg 281  Q
    ||||    
T  45146348 actg 45146351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 45146121 - 45146185
Alignment:
Q  45 cataacagaactacaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagc 110  Q
    ||||||||||||||||||||||  ||| |||||||||||||||||||  ||||||||| |||||||    
T  45146121 cataacagaactacaatttttaa-aattcaaacatatatagcagaagaaacatgaacactaaaagc 45146185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 148 - 453
Target Start/End: Complemental strand, 1300553 - 1300236
Alignment:
Q  148 accattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattcta-aacatcctaagaacagaattaggacttgaaggcatagcattaaca 246  Q
    ||||||||||| ||| ||| ||||||  ||| |||||||||||| |||||| || ||||||| ||||||| || |||||||||||||| |||||||||||    
T  1300553 accattttaggcacccaattaagagggccattaggtgaatgaggggccattttataacatcccaagaacataaataggacttgaaggc-tagcattaaca 1300455  T
Q  247 tttg------aattaacatttaccactcttttctgacact-gcaaaagttgacaagcaaaacccatgttaggatttgtaacaccacgagcattcttgaca 339  Q
    ||||      |||| |||||||| |||||||||| ||||| | |||| ||||||||||||| |||||||||||||||||||||   |||||||||| |||    
T  1300454 tttgcatttgaatttacatttacaactcttttctaacacttgtaaaatttgacaagcaaaatccatgttaggatttgtaacac---gagcattcttcaca 1300358  T
Q  340 taat---------gaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaat 430  Q
    ||||         ||||||||||||||||  ||||||||| |||| ||| | |||||||||| || ||||||||||||||||||| |||||| |||||||    
T  1300357 taatattgaaattgaaaagcatcttcaaatatttgtccttttctctacaga-gataagcaatgacaaaagaggttgatctagaaataccttgtcaacaat 1300259  T
Q  431 gaacaagaacacgaccaccttgt 453  Q
    ||||||||||| |||||||||||    
T  1300258 gaacaagaacaagaccaccttgt 1300236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 497
Target Start/End: Complemental strand, 7599365 - 7599211
Alignment:
Q  343 tgaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaatgaacaagaacac 442  Q
    ||||||||||| ||||| || |||||||| ||||||||||||||||||||||| | ||| || || || || || |||||||||||||||||||  || |    
T  7599365 tgaaaagcatcatcaaaactctgtccttccctccacataagataagcaataacaagagacgtcgacctcgacaccccttgacaacaatgaacaaacaccc 7599266  T
Q  443 gaccaccttgtaatctaacatcctcaaaataatcaaaaacatcatacaaaatact 497  Q
      |||   | |   |||||||||||||| |||||||| ||||||||||| |||||    
T  7599265 tcccattcttttccctaacatcctcaaagtaatcaaacacatcatacaatatact 7599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 48621585 - 48621509
Alignment:
Q  12 aacctgtgtagctgccaatcgtgcattacaacacataacagaactacaat-ttttaccaatccaaacatatatagca 87  Q
    ||||| ||||||| |  ||| ||||||||||| |||||  |||||||||| ||||||| ||||||| ||||||||||    
T  48621585 aacctctgtagctactgatcatgcattacaacgcataatcgaactacaattttttaccgatccaaatatatatagca 48621509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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