View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7257_low_9 (Length: 496)

Name: NF7257_low_9
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7257_low_9
NF7257_low_9
[»] chr8 (5 HSPs)
chr8 (268-494)||(12930826-12931054)
chr8 (268-480)||(12935572-12935786)
chr8 (275-345)||(26504985-26505055)
chr8 (277-389)||(15588948-15589060)
chr8 (427-472)||(26504850-26504895)
[»] chr4 (9 HSPs)
chr4 (268-494)||(14174087-14174316)
chr4 (268-494)||(28611554-28611783)
chr4 (268-484)||(14178841-14179060)
chr4 (268-481)||(28606805-28607021)
chr4 (268-480)||(44161736-44161949)
chr4 (268-480)||(11104618-11104829)
chr4 (268-481)||(48826701-48826912)
chr4 (283-453)||(48708086-48708256)
chr4 (275-368)||(24726288-24726381)
[»] chr1 (1 HSPs)
chr1 (268-480)||(34907289-34907503)
[»] chr5 (5 HSPs)
chr5 (268-480)||(29106878-29107090)
chr5 (268-481)||(42910992-42911204)
chr5 (400-494)||(38994685-38994779)
chr5 (298-388)||(38997230-38997320)
chr5 (425-494)||(38997124-38997193)
[»] chr7 (7 HSPs)
chr7 (268-480)||(37040426-37040641)
chr7 (268-494)||(15290378-15290608)
chr7 (270-480)||(12099151-12099361)
chr7 (398-480)||(12084669-12084751)
chr7 (270-332)||(12082166-12082227)
chr7 (275-387)||(2757307-2757418)
chr7 (420-495)||(2757198-2757273)
[»] chr2 (1 HSPs)
chr2 (268-481)||(8539335-8539549)
[»] chr6 (2 HSPs)
chr6 (298-480)||(2100199-2100379)
chr6 (275-305)||(2100723-2100753)
[»] chr3 (2 HSPs)
chr3 (398-494)||(51302937-51303033)
chr3 (353-389)||(51302308-51302344)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 268 - 494
Target Start/End: Original strand, 12930826 - 12931054
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12930826 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt 12930925  T
Q  368 ccacgttaaatattggtgttca--nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc 465  Q
    ||||||||||||||||||||||          |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12930926 ccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagc 12931025  T
Q  466 tcgtcgagcccaacaactggtatcagagc 494  Q
    |||||||||||||||| ||||||||||||    
T  12931026 tcgtcgagcccaacaagtggtatcagagc 12931054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 268 - 480
Target Start/End: Original strand, 12935572 - 12935786
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12935572 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt 12935671  T
Q  368 ccacgttaaatattggtgttca--nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc 465  Q
    ||||||||||||||||||||||          |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  12935672 ccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttggaattttaatttacacttgcgttaagc 12935771  T
Q  466 tcgtcgagcccaaca 480  Q
    |||||||||||||||    
T  12935772 tcgtcgagcccaaca 12935786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 26505055 - 26504985
Alignment:
Q  275 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttt 345  Q
    ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||||||    
T  26505055 agagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggtttt 26504985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 389
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
Q  277 agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaa 376  Q
    |||||||||| ||| |||||||||| ||| ||| |||| |||||||||  ||||||||| | || |||||| |||| || ||||||||||| ||   |||    
T  15588948 agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa 15589047  T
Q  377 atattggtgttca 389  Q
    |||||| ||||||    
T  15589048 atattgatgttca 15589060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
Q  427 ttttggattttggaattttaatttacacttgcgttaagctcgtcga 472  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||||    
T  26504895 ttttggattttgaaattttaatttacacttccattaaactcgtcga 26504850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 268 - 494
Target Start/End: Original strand, 14174087 - 14174316
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14174087 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt 14174186  T
Q  368 ccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag 464  Q
    ||||||||||||||||||||||            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14174187 ccacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaag 14174286  T
Q  465 ctcgtcgagcccaacaactggtatcagagc 494  Q
    ||||||||||||||||| ||||||||||||    
T  14174287 ctcgtcgagcccaacaagtggtatcagagc 14174316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 268 - 494
Target Start/End: Complemental strand, 28611783 - 28611554
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28611783 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt 28611684  T
Q  368 ccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag 464  Q
     |||||||||||||||||||||           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28611683 tcacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaag 28611584  T
Q  465 ctcgtcgagcccaacaactggtatcagagc 494  Q
    ||||||||||||||||| ||||||||||||    
T  28611583 ctcgtcgagcccaacaagtggtatcagagc 28611554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 268 - 484
Target Start/End: Original strand, 14178841 - 14179060
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14178841 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt 14178940  T
Q  368 ccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag 464  Q
    ||||||||||||||||||||||           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14178941 ccacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaag 14179040  T
Q  465 ctcgtcgagcccaacaactg 484  Q
    ||||||||||||||||||||    
T  14179041 ctcgtcgagcccaacaactg 14179060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 268 - 481
Target Start/End: Complemental strand, 28607021 - 28606805
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28607021 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt 28606922  T
Q  368 ccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag 464  Q
     ||||||||||||||||||| |           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28606921 tcacgttaaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaag 28606822  T
Q  465 ctcgtcgagcccaacaa 481  Q
    |||||||||||||||||    
T  28606821 ctcgtcgagcccaacaa 28606805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 268 - 480
Target Start/End: Original strand, 44161736 - 44161949
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44161736 gtgtgtaagagagtggagagaat--tgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt 44161833  T
Q  368 ccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag 464  Q
    ||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44161834 ccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag 44161933  T
Q  465 ctcgtcgagcccaaca 480  Q
    ||||||||||||||||    
T  44161934 ctcgtcgagcccaaca 44161949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 268 - 480
Target Start/End: Original strand, 11104618 - 11104829
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||| ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||  |||||  ||||||||| ||||    
T  11104618 gtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtggttta-ccctcgatattagaggatttt 11104716  T
Q  368 ccacgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctc 467  Q
    | | ||||||||||||||||||        ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104717 ctatgttaaatattggtgttcatttttatcgctacagctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctc 11104816  T
Q  468 gtcgagcccaaca 480  Q
    |||||||||||||    
T  11104817 gtcgagcccaaca 11104829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 268 - 481
Target Start/End: Complemental strand, 48826912 - 48826701
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||    
T  48826912 gtgtgtaagagagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggatttt 48826814  T
Q  368 ccacgttaaatattggtgttc-annnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagct 466  Q
    |||||||||||||||||||||          |||||||||||||||||||||||||||||  ||| |||||| |||||||||||||| ||||||||||||    
T  48826813 ccacgttaaatattggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagct 48826716  T
Q  467 cgtcgagcccaacaa 481  Q
    |||||| ||||||||    
T  48826715 cgtcgatcccaacaa 48826701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 283 - 453
Target Start/End: Complemental strand, 48708256 - 48708086
Alignment:
Q  283 gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattg 382  Q
    ||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||||||||| || ||||||| || ||||| || |||||||||||    
T  48708256 gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg 48708157  T
Q  383 gtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttaca 453  Q
    || || |        || ||| ||||| || ||||| |||| ||||||  |||||||||||||||||||||    
T  48708156 gtatttaattttatcgccaccactgcgttgtaagattcaatttcttttatattttggaattttaatttaca 48708086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 368
Target Start/End: Complemental strand, 24726381 - 24726288
Alignment:
Q  275 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttc 368  Q
    ||||| ||||||||||||| | || |||||||||||| ||||||||||||| ||||||||| ||||| ||||||||   ||||||| |||||||    
T  24726381 agagaatggagagaatattattatgttctttaatataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc 24726288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 268 - 480
Target Start/End: Original strand, 34907289 - 34907503
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34907289 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt 34907388  T
Q  368 ccacgttaaatattggtgttca--nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc 465  Q
    ||||||||||||||||||||||          |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34907389 ccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagc 34907488  T
Q  466 tcgtcgagcccaaca 480  Q
    |||||||||||||||    
T  34907489 tcgtcgagcccaaca 34907503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 5e-88; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 268 - 480
Target Start/End: Complemental strand, 29107090 - 29106878
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29107090 gtgtgtaagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt 29106991  T
Q  368 ccacgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctc 467  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  29106990 ccacgttaaatattggtgttcatttttaacgctaccgctgcgctgcaagatccaatcttttttggattttggaattttaatttacacttgcattaagctc 29106891  T
Q  468 gtcgagcccaaca 480  Q
     |||| |||||||    
T  29106890 ctcgatcccaaca 29106878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 268 - 481
Target Start/End: Complemental strand, 42911204 - 42910992
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  42911204 gtgtgtgagagagtggagagaatattgtaatattcttaaatatagtggaatatttt-cggagtttgtcccgtggtttttccctcggtattagagggtttt 42911106  T
Q  368 ccacgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctc 467  Q
    ||| ||||||||||||||||||        | | |||||||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  42911105 ccatgttaaatattggtgttcatttttatcgttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaatttccacttgcgttaagctc 42911006  T
Q  468 gtcgagcccaacaa 481  Q
    ||||||||||||||    
T  42911005 gtcgagcccaacaa 42910992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 494
Target Start/End: Complemental strand, 38994779 - 38994685
Alignment:
Q  400 taccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaactggtatcagagc 494  Q
    ||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||| || ||||| ||||| |||||||||| ||||||||||||    
T  38994779 taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaagtggtatcagagc 38994685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
Q  298 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttc 388  Q
    |||||||||||||| |||| ||||||| |||||||||||||| |||||||  ||  ||||||||||||||| |||| |||||||| |||||    
T  38997320 tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc 38997230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 494
Target Start/End: Complemental strand, 38997193 - 38997124
Alignment:
Q  425 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaactggtatcagagc 494  Q
    ||||||||||| ||||||||||||||||||  || |||||| | |||| |||||||| | |||| |||||    
T  38997193 tcttttggattctggaattttaatttacacccgcattaagcccttcgaacccaacaagtagtattagagc 38997124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 268 - 480
Target Start/End: Complemental strand, 37040641 - 37040426
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37040641 gtgtgtgagagagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt 37040542  T
Q  368 ccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag 464  Q
    ||||||||||||||||||||||           |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  37040541 ccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttggaattttaatttacacttgcgttaag 37040442  T
Q  465 ctcgtcgagcccaaca 480  Q
    ||||||||||||||||    
T  37040441 ctcgtcgagcccaaca 37040426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 268 - 494
Target Start/End: Original strand, 15290378 - 15290608
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||| | |||| |||||||||||||||    
T  15290378 gtgtgtaagagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtcccgtggtttatacctcggtattagagggtttt 15290477  T
Q  368 ccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctc-ttttggattttggaattttaatttacacttgcgttaa 463  Q
    ||||||||||||||||||||||           ||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||    
T  15290478 ccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttggattttgaaattttaatttacaattgcgttaa 15290577  T
Q  464 gctcgtcgagcccaacaactggtatcagagc 494  Q
    |||||||||||||||||| ||||||||||||    
T  15290578 gctcgtcgagcccaacaagtggtatcagagc 15290608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 270 - 480
Target Start/End: Original strand, 12099151 - 12099361
Alignment:
Q  270 gtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttcc 369  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||||||||| ||   ||||||||||||| |    
T  12099151 gtgtaagagagtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttc 12099250  T
Q  370 acgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgt 469  Q
    |||| |||||||| | ||||        |||| || || |||||||||||  |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  12099251 acgtaaaatattgcttttcatttttatcgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgt 12099350  T
Q  470 cgagcccaaca 480  Q
    |||||||||||    
T  12099351 cgagcccaaca 12099361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 398 - 480
Target Start/End: Original strand, 12084669 - 12084751
Alignment:
Q  398 gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 480  Q
    ||||||| |||||| ||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||| ||||||||||    
T  12084669 gctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca 12084751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 12082166 - 12082227
Alignment:
Q  270 gtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagttt 332  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  12082166 gtgtaagagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttggagttt 12082227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 387
Target Start/End: Complemental strand, 2757418 - 2757307
Alignment:
Q  275 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtt 374  Q
    ||||||||||||||||| || |||||| || |||||||||||||| |||||  | |||||| | |||||||||| | || |||| |||| ||| ||  ||    
T  2757418 agagagtggagagaatagtgcaatatttttaaatatagtggaata-ttttcaaaatttgtctcatggtttttccttaagcattaaaggggttttcatatt 2757320  T
Q  375 aaatattggtgtt 387  Q
    |||||||||||||    
T  2757319 aaatattggtgtt 2757307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 495
Target Start/End: Complemental strand, 2757273 - 2757198
Alignment:
Q  420 caatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaactggtatcagagca 495  Q
    |||| ||||||| |||||||||||||||||||||||||   ||||||||| || | |||||| || ||| ||||||    
T  2757273 caatttcttttgaattttggaattttaatttacacttgtaataagctcgttgaacacaacaagtgatataagagca 2757198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 268 - 481
Target Start/End: Original strand, 8539335 - 8539549
Alignment:
Q  268 gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtttt 367  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||    
T  8539335 gtgtgtaagagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctcggtattagagggtttt 8539434  T
Q  368 ccacgttaaatattggtgttca-nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagct 466  Q
    ||||||||||||||| ||||||         | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  8539435 ccacgttaaatattgatgttcattttttattgttaccgctgcgctgcaagatccaatctcttttagaatttggaattttaatttacacttgcgttaagct 8539534  T
Q  467 cgtcgagcccaacaa 481  Q
    |||||||||||||||    
T  8539535 cgtcgagcccaacaa 8539549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 298 - 480
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
Q  298 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnn 397  Q
    |||||||||||||||||||||||||||||||||||| |||   ||||||| |||| ||||| |||||||||||| |||||||||| ||||||            
T  2100379 tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttatc 2100283  T
Q  398 gctaccgctgcgctgcaaga-tccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 480  Q
      || || || ||||||| | || |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2100282 attatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca 2100199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 2100753 - 2100723
Alignment:
Q  275 agagagtggagagaatattgtaatattcttt 305  Q
    |||||||||||||||||||||||||||||||    
T  2100753 agagagtggagagaatattgtaatattcttt 2100723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 398 - 494
Target Start/End: Original strand, 51302937 - 51303033
Alignment:
Q  398 gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaactggtatcagagc 494  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  51302937 gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaagtggtatcggagc 51303033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
Q  353 gtattagagggttttccacgttaaatattggtgttca 389  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302308 gtattagagggttttccacgttaaatattggtgttca 51302344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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