View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7258_high_10 (Length: 308)
Name: NF7258_high_10
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7258_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 41075439 - 41075727
Alignment:
| Q |
10 |
ggagttaggtccaatagttggtattctggatttctggtggtgtgtgcttagttttgacattgagatctgctgtaactgtattttgtgattatccggttgt |
109 |
Q |
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| T |
41075439 |
ggagttaggtccaatagttggtattctggatttctggtggtgtgtgcttagttttgacattgagatctgctgtaactgtattttgtgattatccgattgt |
41075538 |
T |
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| Q |
110 |
ctaacacatgatagagtaggtcggctgcaagactgcaaccgttaacagaaggtgggtagagtctgcttgcgttgattatacatccaacacttctactaat |
209 |
Q |
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| T |
41075539 |
ctaacacatgatagagtaggtcgtctgcaagactgcaacccttaacagaaggtgggtagagtttgcttgcgttgattatacatccaacacttctactaat |
41075638 |
T |
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| Q |
210 |
aaaatatctctaattatc--------aggnnnnnnnnggagtgagcacaaagttaatttatgattaagtacttaattaagttgtttatt |
290 |
Q |
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| T |
41075639 |
aaaatatctctaattatctaattattaggaaaaaaaaggagtgagcacaaagttaatttatgattaagtacttaattaagttgtttatt |
41075727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 41086936 - 41087040
Alignment:
| Q |
26 |
gttggtattctggatttctggtggtgtgtgcttagttttgacatt--gagatctgctgtaactgtattttgtgattatccggttgtctaacacatgatag |
123 |
Q |
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| T |
41086936 |
gttggtattctggatttctggtggtgtgtgcttagttttgacattttgagatctattgtaattttattgtgt---tgtccgattgtccaacacatgatag |
41087032 |
T |
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| Q |
124 |
agtaggtc |
131 |
Q |
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| T |
41087033 |
tgtaggtc |
41087040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 48297462 - 48297514
Alignment:
| Q |
69 |
ttgagatctgctgtaactgtattttgtgattatccggttgtctaacacatgat |
121 |
Q |
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| T |
48297462 |
ttgagatctgttgtaactgtattttatgattgtctgattgtctaacacatgat |
48297514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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