View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7258_high_13 (Length: 269)

Name: NF7258_high_13
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7258_high_13
NF7258_high_13
[»] chr3 (10 HSPs)
chr3 (2-251)||(2820011-2820260)
chr3 (2-251)||(2760665-2760914)
chr3 (13-251)||(2837052-2837290)
chr3 (17-252)||(2808717-2808952)
chr3 (13-235)||(2750462-2750684)
chr3 (13-251)||(2854262-2854500)
chr3 (4-251)||(2798812-2799059)
chr3 (12-238)||(5414349-5414575)
chr3 (27-252)||(2770513-2770735)
chr3 (17-222)||(2791794-2791999)
[»] scaffold0691 (1 HSPs)
scaffold0691 (13-235)||(4601-4823)
[»] chr1 (1 HSPs)
chr1 (42-237)||(11116230-11116425)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 2820260 - 2820011
Alignment:
Q  2 tactacaacaacacttaaggcatctccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcg 101  Q
    ||||| |||| ||||||||||||| ||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  2820260 tactataacagcacttaaggcatccccatgttctcttcttacatgccttaaacctaacctccttaactgctttaacattttcatctcgttaatgagatcg 2820161  T
Q  102 actcccctatgttttacatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2820160 actcccctatgttttacatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagag 2820061  T
Q  202 aataattttcttcatagttacgatgtaatgcaagaaggtgacgtagcttt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2820060 aataattttcttcatagttacgatgtaatgcaagaaggtgacgtagcttt 2820011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 2760914 - 2760665
Alignment:
Q  2 tactacaacaacacttaaggcatctccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcg 101  Q
    ||||| |||| |||||| ||| || ||||| | |||||||||| |||||||| ||||| | ||||||||  |||||||||||||||| | |||||||||     
T  2760914 tactataacagcacttatggcctccccatgctctcttcttacatgccttaaacctaaccttcttaactgacttaacattttcatctcttgaatgagatca 2760815  T
Q  102 actcccctatgttttacatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagag 201  Q
    ||||||| ||| ||||| |||||||||||||| || || |  ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |    
T  2760814 actcccccatgatttacctccacataataaagcttttgtagggaagccatgtttttaatacctttttccatcttcacaccagatgtaaatccaaacagtg 2760715  T
Q  202 aataattttcttcatagttacgatgtaatgcaagaaggtgacgtagcttt 251  Q
    |||| ||||||||||||||||| |||||||| | ||||||||| ||||||    
T  2760714 aatacttttcttcatagttacggtgtaatgcgaaaaggtgacgaagcttt 2760665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 2837052 - 2837290
Alignment:
Q  13 cacttaaggcatctccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcgactcccctatg 112  Q
    ||||||||||||  ||||||| |||| ||||| |||||||| ||||||||| ||| ||| ||||||||| |||||| | ||| ||||| ||||||| |||    
T  2837052 cacttaaggcattcccatgttctctttttacatgccttaaacctaacttccataattgccttaacatttccatctcttcaataagatctactcccccatg 2837151  T
Q  113 ttttacatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagagaataattttct 212  Q
     | ||| ||||||||| ||||||| || |  |||| || |||||||||||||||  |||||  |||||||| |||||||||||| | |||||| ||| |     
T  2837152 atctacctccacataacaaagtttttgaagggaagtcaagtttttaatacctttaaccatccgcacaccagttgtaaagcccaaaacagaatactttgca 2837251  T
Q  213 tcatagttacgatgtaatgcaagaaggtgacgtagcttt 251  Q
    |||||||||||||| || ||||||||||| |||||||||    
T  2837252 tcatagttacgatggaaagcaagaaggtgtcgtagcttt 2837290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 2808952 - 2808717
Alignment:
Q  17 taaggcatctccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcgactcccctatgtttt 116  Q
    ||||||||  ||||||| |||||| ||| |||||||| ||||| |||||||||||  ||||||||||||||| | ||||||||| || |||| ||| | |    
T  2808952 taaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgccctaacattttcatctcttgaatgagatctacccccccatgatct 2808853  T
Q  117 acatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagagaataattttcttcat 216  Q
    || |||||||||||||| || || |  |||| || ||||||||||||||||||||    |||||| | ||||||||| || |||||||| |||||||| |    
T  2808852 acctccacataataaaggttttgaagggaagtcaagtttttaatacctttttccacgaacacacccgttgtaaagcctaaaagagaatacttttcttcgt 2808753  T
Q  217 agttacgatgtaatgcaagaaggtgacgtagctttt 252  Q
    ||||||| || || ||||||||||| | ||||||||    
T  2808752 agttacggtggaaagcaagaaggtgccttagctttt 2808717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 2750684 - 2750462
Alignment:
Q  13 cacttaaggcatctccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcgactcccctatg 112  Q
    |||||| |||||  |||||||  ||||||||| || ||||| ||||||||||||||||| ||| |||||||||||| | ||||||||| ||||||| |||    
T  2750684 cacttatggcattcccatgttcccttcttacatgctttaaacctaacttccttaactgccttagcattttcatctcttcaatgagatctactcccccatg 2750585  T
Q  113 ttttacatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagagaataattttct 212  Q
     | ||| |||||||||||||| || |  |  |||  ||||||||||||||||||||| |||  ||| |||| |||| |||||||   |||||| |||| |    
T  2750584 atctacctccacataataaaggttttttagggaaatcatgtttttaatacctttttcaatcagcacgccagttgtagagcccaaagcagaatatttttgt 2750485  T
Q  213 tcatagttacgatgtaatgcaag 235  Q
    |||||||| ||||| || |||||    
T  2750484 tcatagttgcgatgaaaagcaag 2750462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 2854262 - 2854500
Alignment:
Q  13 cacttaaggcatctccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcgactcccctatg 112  Q
    |||||| ||| || ||||||| |||||||||| |||||||| ||||| | ||||||||| |||||||||||||||| | ||||||||| || |||| |||    
T  2854262 cacttatggcctccccatgttctcttcttacatgccttaaacctaaccttcttaactgccttaacattttcatctcttgaatgagatctacccccccatg 2854361  T
Q  113 ttttacatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagagaataattttct 212  Q
     |  || ||||||||||| || || || |  |||| || ||||||||||||||||| || |  |||||| | |||||| ||||| |||||||| ||| |     
T  2854362 atcgacctccacataatataggttttgaagggaagtcaagtttttaataccttttttcaccaacacaccggttgtaaatcccaaaagagaatactttgca 2854461  T
Q  213 tcatagttacgatgtaatgcaagaaggtgacgtagcttt 251  Q
    ||||| |||  ||| || ||||||||||| |||||||||    
T  2854462 tcataattattatggaaagcaagaaggtgccgtagcttt 2854500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 2799059 - 2798812
Alignment:
Q  4 ctacaacaacacttaaggcatctccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcgac 103  Q
    ||||| || ||||||||| ||  ||||||| || ||| ||| |||||||| || |  ||||||| | | ||| ||||||||| || | ||||||||| ||    
T  2799059 ctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctgaactccttaaattccttagcattttcatttcttgaatgagatcaac 2798960  T
Q  104 tcccctatgttttacatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagagaa 203  Q
     || | ||| | ||| |||||||||||||| || || |  |||  || ||||||||||||||||||||||  |||||||| |||||||||||| ||||||    
T  2798959 ccctccatgatctacctccacataataaagattttgtagggaaatcaagtttttaatacctttttccatcaacacaccagttgtaaagcccaaaagagaa 2798860  T
Q  204 taattttcttcatagttacgatgtaatgcaagaaggtgacgtagcttt 251  Q
    || |   |||||||||||||||| || ||||||||||| |||||||||    
T  2798859 tactccgcttcatagttacgatggaaagcaagaaggtgccgtagcttt 2798812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 5414575 - 5414349
Alignment:
Q  12 acacttaaggcatctccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcgactcccctat 111  Q
    ||||||| |||||  || |||| |||||||||| || ||||| | ||||||||||||||||| | ||| |||||||| | ||||||||| ||||||| ||    
T  5414575 acacttatggcattcccgtgttctcttcttacatgctttaaacccaacttccttaactgcttaagcatcttcatctcttcaatgagatccactcccccat 5414476  T
Q  112 gttttacatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagagaataattttc 211  Q
    | | ||| | |||||||||||  || || |  |||| |||||||||||||||||||||||||  |||||||| |||  |||| |    |||||| |||||    
T  5414475 gatctacctgcacataataaaaattttgtagggaagtcatgtttttaatacctttttccatcagcacaccagttgtcgagcctagagcagaatatttttc 5414376  T
Q  212 ttcatagttacgatgtaatgcaagaag 238  Q
    |||| |||||||||| || ||||||||    
T  5414375 ttcaaagttacgatggaaagcaagaag 5414349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 252
Target Start/End: Complemental strand, 2770735 - 2770513
Alignment:
Q  27 ccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcgactcccctatgttttacatccacat 126  Q
    ||||||| || |||||| ||||||||  ||||| ||||||||||| ||| |||||||||||| | ||||||||  || |||| ||| | ||| |||||||    
T  2770735 ccatgttctcgtcttactcgccttaagcctaacctccttaactgccttagcattttcatctcttgaatgagatatacgcccccatgatctacctccacat 2770636  T
Q  127 aataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagagaataattttcttcatagttacgatg 226  Q
     |||||| || || |  |||| |||||||||||||||||||| |||| || |||||| |||   |||||| |||||||||||| |||| ||||||| |||    
T  2770635 cataaagattttgtagggaagtcatgtttttaatacctttttgcatcctcccaccagttgt---gcccaaaagagaataatttccttcgtagttactatg 2770539  T
Q  227 taatgcaagaaggtgacgtagctttt 252  Q
      |  |||||||||  ||||||||||    
T  2770538 gcaaacaagaaggtttcgtagctttt 2770513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 2791999 - 2791794
Alignment:
Q  17 taaggcatctccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcgactcccctatgtttt 116  Q
    ||||||||  ||||||| || ||||||  | |||||  ||||| ||||||||||| ||| |||||||||||| | ||||||||| ||||||| ||| | |    
T  2791999 taaggcattcccatgttctcgtcttacttgacttaagcctaacctccttaactgccttagcattttcatctcttgaatgagatctactcccccatgatct 2791900  T
Q  117 acatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagagaataattttcttcat 216  Q
    || ||||| | |||||| || || |  |||| || | ||||||||||||||| |||| ||||||||| |||| ||||||| |||||||||||| |||  |    
T  2791899 acctccacgtgataaaggttttgaagggaagtcaagattttaatacctttttgcatcctcacaccagttgtatagcccaaaagagaataatttcctttgt 2791800  T
Q  217 agttac 222  Q
    ||||||    
T  2791799 agttac 2791794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 4601 - 4823
Alignment:
Q  13 cacttaaggcatctccatgttttcttcttacacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcgactcccctatg 112  Q
    ||||||||||||  | ||||| |||||||||| |||||||| ||||||||||||||||| |||  ||||||||||| | ||||||||| ||||||| |||    
T  4601 cacttaaggcatggctatgttctcttcttacatgccttaaacctaacttccttaactgccttagtattttcatctcttcaatgagatctactcccccatg 4700  T
Q  113 ttttacatccacataataaagtttctgcaatgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagagaataattttct 212  Q
     | ||  || |||||| |||  || || |  |||| || ||||||||||||||||||||||  |||||||| ||||||||| || | |||||| || |||    
T  4701 atctagctcgacataacaaatattttgtagggaagtcaagtttttaatacctttttccatcagcacaccagttgtaaagcctaaaatagaatatttatct 4800  T
Q  213 tcatagttacgatgtaatgcaag 235  Q
    |||||||||||||| || |||||    
T  4801 tcatagttacgatggaaagcaag 4823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 11116230 - 11116425
Alignment:
Q  42 acacgccttaaagctaacttccttaactgctttaacattttcatctcgttaatgagatcgactcccctatgttttacatccacataataaagtttctgca 141  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| |  || ||||| ||||||| ||| | ||| ||||||||| | |  || || |    
T  11116230 acacgccttaaacctaactttcttaactgccttaacattttcatctcttctataagatctactcccccatgatctacctccacataacacatattttgaa 11116329  T
Q  142 atgaagccatgtttttaatacctttttccatcttcacaccagatgtaaagcccaacagagaataattttcttcatagttacgatgtaatgcaagaa 237  Q
      |||| || |||||||||||||||||||||   |||||||| | |||||||||| | |||||| ||||||||||||| |||||| || |||||||    
T  11116330 gggaagtcaagtttttaatacctttttccataagcacaccagttataaagcccaaaacagaatatttttcttcatagtaacgatggaaagcaagaa 11116425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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