View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7258_high_16 (Length: 248)

Name: NF7258_high_16
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7258_high_16
NF7258_high_16
[»] chr8 (2 HSPs)
chr8 (128-233)||(5662761-5662866)
chr8 (32-111)||(35349204-35349283)
[»] scaffold0003 (2 HSPs)
scaffold0003 (128-232)||(36769-36873)
scaffold0003 (160-232)||(42951-43024)
[»] chr6 (2 HSPs)
chr6 (160-232)||(27444337-27444410)
chr6 (182-228)||(4660112-4660158)
[»] chr7 (1 HSPs)
chr7 (169-228)||(11649456-11649515)
[»] chr4 (1 HSPs)
chr4 (32-123)||(38467450-38467540)
[»] scaffold0475 (1 HSPs)
scaffold0475 (182-228)||(7410-7456)
[»] chr3 (5 HSPs)
chr3 (128-213)||(31688059-31688144)
chr3 (191-232)||(52131068-52131109)
chr3 (128-213)||(31896723-31896808)
chr3 (128-213)||(31912432-31912517)
chr3 (169-213)||(31946080-31946124)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 5662761 - 5662866
Alignment:
Q  128 gtaaatgataaacaattaatgctaaccgcttcgaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccctcctctctttccatc 227  Q
    |||||||| |||||||||||| |||| | ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  5662761 gtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaaccctcctctctctccatc 5662860  T
Q  228 tctctg 233  Q
    ||||||    
T  5662861 tctctg 5662866  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 35349204 - 35349283
Alignment:
Q  32 ctttccaacttatgccttcaaattaaaatggcttttgttttcccatgcaaaagtggtgtaccaaggctatgagcttttat 111  Q
    ||||||||||| |||| |||||||||   |||||||||||||||||||||| ||| ||||||||||||| | ||||||||    
T  35349204 ctttccaacttctgccgtcaaattaagcaggcttttgttttcccatgcaaatgtgttgtaccaaggctaggtgcttttat 35349283  T

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Target: scaffold0003 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 36873 - 36769
Alignment:
Q  128 gtaaatgataaacaattaatgctaaccgcttcgaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccctcctctctttccatc 227  Q
    |||||||| ||| |||||||| || | | ||| ||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||| ||| ||||||    
T  36873 gtaaatgacaaataattaatgttatcggtttccaatacagtgttgcatatccatctcattggaaacaatggctctgacttaaccctcctttctctccatc 36774  T
Q  228 tctct 232  Q
    |||||    
T  36773 tctct 36769  T

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Target: scaffold0003; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 43024 - 42951
Alignment:
Q  160 gaatacagcgttgcatatccatctcattgggaacca-tggctctgacctaaccctcctctctttccatctctct 232  Q
    |||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| ||| |||||||||||    
T  43024 gaatacagtgttgcatatccatttcattgggaaacaatggctctgacctaaccctcctttctctccatctctct 42951  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 27444337 - 27444410
Alignment:
Q  160 gaatacagcgttgcatatccatctcattgggaacca-tggctctgacctaaccctcctctctttccatctctct 232  Q
    |||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| ||| |||||||||||    
T  27444337 gaatacagtgttgcatatccatttcattgggaaacaatggctctgacctaaccctcctttctctccatctctct 27444410  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 4660158 - 4660112
Alignment:
Q  182 ctcattgggaaccatggctctgacctaaccctcctctctttccatct 228  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  4660158 ctcattgggaaccatggctctgacctaaccctcctctctctccatct 4660112  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 11649515 - 11649456
Alignment:
Q  169 gttgcatatccatctcattgggaaccatggctctgacctaaccctcctctctttccatct 228  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||    
T  11649515 gttgcatatccatctcattggaaaccatggctttgacctaaccctcctttctctccatct 11649456  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 38467540 - 38467450
Alignment:
Q  32 ctttccaacttatgccttcaaattaaaatggcttttgttttcccatgcaaaagtggtgtaccaaggctatgagcttttatggcatatgattt 123  Q
    ||||||||||| |||| |||||||||   |||||||||||||| ||||||| ||| ||||||||||||| | ||||||||| ||||||||||    
T  38467540 ctttccaacttctgccgtcaaattaagtaggcttttgttttcc-atgcaaatgtgttgtaccaaggctaggtgcttttatgacatatgattt 38467450  T

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Target: scaffold0475 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 7456 - 7410
Alignment:
Q  182 ctcattgggaaccatggctctgacctaaccctcctctctttccatct 228  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  7456 ctcattgggaaccatggctctgacctaaccctcctctctctccatct 7410  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 31688059 - 31688144
Alignment:
Q  128 gtaaatgataaacaattaatgctaaccgcttcgaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccct 213  Q
    |||||||| ||| |||||||| || | | ||| |||| || ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  31688059 gtaaatgacaaataattaatgttatcggtttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaaccct 31688144  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 52131068 - 52131109
Alignment:
Q  191 aaccatggctctgacctaaccctcctctctttccatctctct 232  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  52131068 aaccatggctctgacctaaccctcctctctctccatctctct 52131109  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 31896808 - 31896723
Alignment:
Q  128 gtaaatgataaacaattaatgctaaccgcttcgaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccct 213  Q
    |||||||| ||| |||||||| || |   ||| |||| || ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  31896808 gtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaaccct 31896723  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 31912517 - 31912432
Alignment:
Q  128 gtaaatgataaacaattaatgctaaccgcttcgaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccct 213  Q
    |||||||| ||| |||||||| || |   ||| |||| || ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  31912517 gtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaaccct 31912432  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 31946124 - 31946080
Alignment:
Q  169 gttgcatatccatctcattgggaaccatggctctgacctaaccct 213  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  31946124 gttgcatatccatcttattggaaacaatggctctgacctaaccct 31946080  T

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