View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7258_high_2 (Length: 510)
Name: NF7258_high_2
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7258_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 18524688 - 18524972
Alignment:
| Q |
13 |
aatatcatcaactttcaatacaaatannnnnnnnaaaaagcaaacgaagttgcagcaagatgcaacccctggatatattaataacagatgaaagaacaaa |
112 |
Q |
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| T |
18524688 |
aatatcatcaattttcaatacaaatattttttaaaaaaagcaaaggaagttgcaggaagatgcaacccctggatatattaataacagatgaaagaacaaa |
18524787 |
T |
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| Q |
113 |
acgggggaatgaggggggacataaacctaaccctcaaaagagttaacaaagtctaaaa-ttaggaataccaagtccattcctatcaaaatggtcatatat |
211 |
Q |
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| T |
18524788 |
aaaggg-aataaagggggacataaacctaaccctcaaaagagttaacaaagtctaaaaattaggaataccaagtccattcctatcaaaatggtcatatat |
18524886 |
T |
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| Q |
212 |
ttctacaggcagattttgaaacctaagtgtaagaaggtatgaagagaccaaagttagccagttgatatgcaaaatggtttccttctc |
298 |
Q |
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| T |
18524887 |
ttgtacaggcagattttgaaacc-aagtgtaagaaggtatggagagaccaaagttagcaagttgatctgcaaaatggtttccttctc |
18524972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 296 - 493
Target Start/End: Original strand, 18525281 - 18525479
Alignment:
| Q |
296 |
ctccatcagtgttgtatt-attacaatcaagaattggaggggaccaacgaacctctttactgatagtttgatttgagggattaattctaacatcaaatga |
394 |
Q |
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| T |
18525281 |
ctccatcagtgttgtatttaatacaatcaagaattggaggggaccaacgaacctctttactgatagttggctttgagagattaattctaacatcaaatga |
18525380 |
T |
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| Q |
395 |
tttaaggatggagaagtcggtgattgatgagttagcagaaagatttgaagcattgtcagaaattgaggcagctgacagaactaagttaaaggttgatct |
493 |
Q |
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| T |
18525381 |
tttaaggatggagaagtcagtgattgatgagttagtagaaagatttgaagcattgtcagaaattgaggcacctgacagaactaagttaaaggttgatct |
18525479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 6162237 - 6162314
Alignment:
| Q |
126 |
gggggacataaa-cctaaccctcaaaagagttaacaaagtctaaaattaggaataccaagtccattcctatcaaaatg |
202 |
Q |
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| T |
6162237 |
gggggacataaaacctaaccctcaggagagttaatgaagcctaaaattaggaatatcaagactattcctatcaaaatg |
6162314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 433
Target Start/End: Complemental strand, 38360273 - 38360212
Alignment:
| Q |
372 |
ggattaattctaacatcaaatgatttaaggatggagaagtcggtgattgatgagttagcaga |
433 |
Q |
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| T |
38360273 |
ggattaattctaacttcaaagaatttaaggatagaaaagtctgtgattgatgaattagcaga |
38360212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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