View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7258_high_3 (Length: 465)
Name: NF7258_high_3
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7258_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 104 - 448
Target Start/End: Original strand, 47660439 - 47660783
Alignment:
| Q |
104 |
gtcatactaactggagcattataatttggttccttcttttgaagttgtcggagatttagttgtgttctcttgttctagttttctttttctcaccaatgaa |
203 |
Q |
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| T |
47660439 |
gtcatactaactggagcattataatttggttccttcttttgaagttgtcggagatttagttgtgttctcttgttctagttttctttttctcaccaatgaa |
47660538 |
T |
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| Q |
204 |
aagctagattttatcttttcaaagtcttctgatttgcttgcttctttagttaatatgtttaatacatcccatccatataagattcttacataaccctgct |
303 |
Q |
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| T |
47660539 |
aagctagattttatcttttcaaagtcttttaatttgcttgcttctttagttaatatgtttaatacatcccatccatataagattcttacataaccctgct |
47660638 |
T |
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| Q |
304 |
gatagtttagttagtagcagttgctgcttggttgcatgatttccttgctacataagggtttatcgctaaaaatgttgtatattgctgcatattgacagtc |
403 |
Q |
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| T |
47660639 |
gatagtttagttagtagcagttgctgcttggttgcatgatttccttgctacataagggcttatcgctaaaaatgttgtatattgctgcatattgacagtc |
47660738 |
T |
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| Q |
404 |
attgaagctcaatagtttcccttttcatttcccctcatttaaagg |
448 |
Q |
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| T |
47660739 |
attgaagctcaatagtttcccttttcatttcccctcatttaaagg |
47660783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 47658805 - 47658891
Alignment:
| Q |
19 |
cgtgatcttattcactattcagaaagaaacaaaattttgggtaggatttgtctgtgataaattgaaattgtaattgattgacaatgt |
105 |
Q |
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| T |
47658805 |
cgtgatcttattcactattcagaaagaaacaaaattttgagtaggatttgtctgtgataaattgaaattgtaattgattgacaatgt |
47658891 |
T |
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