View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7258_high_6 (Length: 394)
Name: NF7258_high_6
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7258_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 378
Target Start/End: Original strand, 10873916 - 10874286
Alignment:
| Q |
8 |
cgaagaatatgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatctt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873916 |
cgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatctt |
10874015 |
T |
|
| Q |
108 |
ttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactgtgaatcctcctgcttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10874016 |
ttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactgtgaatcctcctgcttc |
10874115 |
T |
|
| Q |
208 |
ttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgatttnnnnnnnnnnnnnnnnnnnngagttcagttcagtttagggga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10874116 |
ttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgatttgaaaaagaaaagaaagaaaggagttcagttcagtttagggga |
10874215 |
T |
|
| Q |
308 |
tgattgatgatgggtaatactaattgcttgaaaatgattttcaatgttattattatttatagacaaattaa |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10874216 |
tgattgatgatgggtaatactaattgcttgaaaatgattttcaatgttattattatttatagacaaattaa |
10874286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 378
Target Start/End: Original strand, 10878987 - 10879357
Alignment:
| Q |
8 |
cgaagaatatgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatctt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878987 |
cgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatctt |
10879086 |
T |
|
| Q |
108 |
ttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactgtgaatcctcctgcttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10879087 |
ttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactgtgaatcctcctgcttc |
10879186 |
T |
|
| Q |
208 |
ttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgatttnnnnnnnnnnnnnnnnnnnngagttcagttcagtttagggga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10879187 |
ttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgatttgaaaaagaaaagaaagaaaggagttcagttcagtttagggga |
10879286 |
T |
|
| Q |
308 |
tgattgatgatgggtaatactaattgcttgaaaatgattttcaatgttattattatttatagacaaattaa |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10879287 |
tgattgatgatgggtaatactaattgcttgaaaatgattttcaatgttattattatttatagacaaattaa |
10879357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 378
Target Start/End: Original strand, 10884058 - 10884428
Alignment:
| Q |
8 |
cgaagaatatgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatctt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10884058 |
cgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatctt |
10884157 |
T |
|
| Q |
108 |
ttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactgtgaatcctcctgcttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10884158 |
ttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactgtgaatcctcctgcttc |
10884257 |
T |
|
| Q |
208 |
ttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgatttnnnnnnnnnnnnnnnnnnnngagttcagttcagtttagggga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10884258 |
ttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgatttgaaaaagaaaagaaagaaaggagttcagttcagtttagggga |
10884357 |
T |
|
| Q |
308 |
tgattgatgatgggtaatactaattgcttgaaaatgattttcaatgttattattatttatagacaaattaa |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10884358 |
tgattgatgatgggtaatactaattgcttgaaaatgattttcaatgttattattatttatagacaaattaa |
10884428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 10866389 - 10866139
Alignment:
| Q |
8 |
cgaagaatatgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatctt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866389 |
cgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatctt |
10866290 |
T |
|
| Q |
108 |
ttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactgtgaatcctcctgcttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866289 |
ttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactgtgaatcctcctgcttc |
10866190 |
T |
|
| Q |
208 |
ttttggttcttcttctcatttttgcttattttctgctgaacgcccatttct |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866189 |
ttttggttcttcttctcatttttgcttattttctgctgaacgcccatttct |
10866139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 10887996 - 10888252
Alignment:
| Q |
19 |
ataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacc |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10887996 |
ataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacc |
10888095 |
T |
|
| Q |
119 |
tgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtaca---------------gtattgactgtgaatcctcctg |
203 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |||| || |||||||||||||| ||| |
|
|
| T |
10888096 |
tgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgctg |
10888195 |
T |
|
| Q |
204 |
cttcttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctct |
260 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
10888196 |
ctgcctttggttcttcttctcatttttgcttattttctgctgaacgtccatctctct |
10888252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 39675950 - 39675791
Alignment:
| Q |
20 |
taaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacct |
119 |
Q |
| |
|
||||||||| || | |||| ||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39675950 |
taaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccg |
39675851 |
T |
|
| Q |
120 |
gttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
179 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
39675850 |
gttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta |
39675791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 10045944 - 10045784
Alignment:
| Q |
19 |
ataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacc |
118 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||| | || |||||||||||||||||| || || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
10045944 |
ataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggtgtggaggttcggatcttctcacgccacc |
10045845 |
T |
|
| Q |
119 |
tgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
179 |
Q |
| |
|
||| |||||||| || |||||||||||||| ||||| ||||||| | ||||||||||| |
|
|
| T |
10045844 |
tgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagta |
10045784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University