View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7258_high_8 (Length: 356)
Name: NF7258_high_8
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7258_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 337
Target Start/End: Original strand, 30347005 - 30347316
Alignment:
| Q |
29 |
ctaaaattctaattaagaaattacctcttgttgtttttattgaagtggcatttatactatatacaacttaaattttatgtacggatacactaatggtcca |
128 |
Q |
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| T |
30347005 |
ctaaaattttaattaagaaattaccttttgttgtttttattgaagtgccaatta--ctatatacaacttaaattttatgtacggatacactaatggtcca |
30347102 |
T |
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| Q |
129 |
aaattaaaagttatggtgacaagaaataaatgaacaaaacactccaagg-----gcctcaaggtggcgt--ttgattgtgttgcctgtttggttgtcggt |
221 |
Q |
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| T |
30347103 |
aaattgaaagttatggtgacaagaaataaatggacaaaacactccaaggaacccgcctcaaggtggcgtacttgattgtgttgcctatttggttgtcagt |
30347202 |
T |
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| Q |
222 |
tggcctaaacatgacgatgagggt-aattttttaaatggggggagagattatccaaaaataagaaaagaatgttggagtatatgatattaccatggttca |
320 |
Q |
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|||| ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
30347203 |
tggcttaaacatgacgatcagggtaaattttttaaat-gggggagagattatccaaaaataagaatagaatgttggag--tatgatattaccatggttca |
30347299 |
T |
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| Q |
321 |
agacacaaagtggtgga |
337 |
Q |
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||||||||||||||||| |
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| T |
30347300 |
agacacaaagtggtgga |
30347316 |
T |
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