View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7258_low_1 (Length: 517)
Name: NF7258_low_1
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7258_low_1 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 506
Target Start/End: Complemental strand, 45846732 - 45846243
Alignment:
| Q |
17 |
caaatgcaattcaaaatctgaatatctagtagtttcaatcaaagacacaaaagagtcnnnnnnnnnnnnnnnnntgatgaccaatccacttatccaaaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45846732 |
caaatgcaattcaaaatctgaatatctagtagtttcaatcaaagacacaaaagagtccaacaacaacaacaacatgatgaccaatccacttatccaaaaa |
45846633 |
T |
|
| Q |
117 |
gacataaacatagaaaatccaacaacacaattccaaaaaacccatcttagagctaccttcaaagaaattatttctatatccaaaattgcttttcccatga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45846632 |
gacataaacatagaaaatccaacaacacaattccaaaaaacccatcttagagctaccttcaaagaagttatttctatatccaaaattgcttttcccatga |
45846533 |
T |
|
| Q |
217 |
ttttcaccggtctcttactctattgtcgttcaatgatctccatgctctttcttggtcacctcggcgaacttgccttagccggcggttcactcgctgtcgg |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45846532 |
ttttcaccggtcttttactctattgtcgttcaatgatctccatgctctttcttggtcacctcggcgaacttgccttagccggcggttcactcgcggtcgg |
45846433 |
T |
|
| Q |
317 |
ctttgcgaacattaccggttactcaatcctctctggtctcgccgttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctcctt |
416 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45846432 |
ctttgcgaacattaccggttactcaatcctctccggtctcgccgttggaatggaacctatttgtggacaagcttttggtgcaaaaagattcactctcctt |
45846333 |
T |
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| Q |
417 |
ggtctatgtttacaaaaaaccattctcttgctactcttaacttctatccctatttcattactttggctttacacaaaacatatccttctt |
506 |
Q |
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| T |
45846332 |
ggtctatgtttacaaaaaaccattctcttgctactcttaacttctatccctatttcattactttggctttacacaaaacatatccttctt |
45846243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 249 - 448
Target Start/End: Original strand, 23617 - 23816
Alignment:
| Q |
249 |
atgatctccatgctctttcttggtcacctcggcgaacttgccttagccggcggttcactcgctgtcggctttgcgaacattaccggttactcaatcctct |
348 |
Q |
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||||| || ||||| ||||||||||||||| || ||||| |||| || || || || ||| | || ||||| ||||| || |||||||| || || | |
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| T |
23617 |
atgatttcaatgctttttcttggtcacctcaatgaccttgcactagctggtgggtcccttgctattggttttgccaacatcactggttactccattcttt |
23716 |
T |
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| Q |
349 |
ctggtctcgccgttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttggtctatgtttacaaaaaaccattctcttgct |
448 |
Q |
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||||||| || ||||| |||||||| |||||||| |||||||||||||| |||| ||||||||| |||||||| ||| | |||| ||||||||| ||||| |
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| T |
23717 |
ctggtcttgctgttggtatggaaccaatttgtggtcaagcttttggtgctaaaaaattcactcttcttggtctttgtcttcaaagaaccattcttttgct |
23816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 2989822 - 2989923
Alignment:
| Q |
318 |
tttgcgaacattaccggttactcaatcctctctggtctcgccgttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttg |
417 |
Q |
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||||| ||||| || |||||||| || ||||||||||| ||| | |||||||||||||||||||| |||||||||||||| |||||||||| ||||||| |
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| T |
2989822 |
tttgcaaacatcacaggttactccattctctctggtcttgccatgggaatggaacctatttgtggtcaagcttttggtgctaaaagattcaaactccttg |
2989921 |
T |
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| Q |
418 |
gt |
419 |
Q |
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|| |
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| T |
2989922 |
gt |
2989923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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