View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7258_low_14 (Length: 260)

Name: NF7258_low_14
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7258_low_14
NF7258_low_14
[»] chr5 (3 HSPs)
chr5 (106-240)||(11036575-11036724)
chr5 (14-95)||(36255250-36255331)
chr5 (23-95)||(35836680-35836752)
[»] chr1 (5 HSPs)
chr1 (12-96)||(38225647-38225731)
chr1 (15-95)||(5598052-5598132)
chr1 (12-88)||(28381441-28381517)
chr1 (67-95)||(46125514-46125542)
chr1 (67-95)||(46127748-46127776)
[»] chr7 (5 HSPs)
chr7 (12-96)||(39693942-39694026)
chr7 (12-96)||(45166144-45166228)
chr7 (30-96)||(42964732-42964798)
chr7 (23-94)||(45977149-45977220)
chr7 (66-96)||(6344281-6344311)
[»] chr8 (3 HSPs)
chr8 (12-96)||(4311420-4311504)
chr8 (23-95)||(8565254-8565326)
chr8 (12-95)||(39298059-39298142)
[»] chr2 (5 HSPs)
chr2 (12-95)||(2208407-2208489)
chr2 (12-96)||(6728363-6728447)
chr2 (15-96)||(13415153-13415234)
chr2 (23-95)||(1467477-1467549)
chr2 (67-96)||(36930654-36930683)
[»] chr3 (5 HSPs)
chr3 (12-94)||(19982251-19982333)
chr3 (31-96)||(49549693-49549758)
chr3 (15-95)||(6985375-6985455)
chr3 (29-96)||(8129424-8129491)
chr3 (65-95)||(8437829-8437859)
[»] scaffold0351 (1 HSPs)
scaffold0351 (25-95)||(13591-13661)
[»] scaffold0750 (1 HSPs)
scaffold0750 (23-96)||(5687-5760)
[»] chr4 (3 HSPs)
chr4 (22-92)||(19163761-19163831)
chr4 (15-96)||(22878053-22878134)
chr4 (12-95)||(17874366-17874450)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 11036724 - 11036575
Alignment:
Q  106 tgttaagtataatatgtttttggtttttctaactataatacatttttacaagattgagagaaataattatctttcgtagtaatatggtgtcgat------ 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||          
T  11036724 tgttaagtataatatgtttttggtttttctaactataatacatttttacaagattgagagaaataattatctttcgtagtgatatggtgtcgatatagta 11036625  T
Q  200 ---------atttgttcctttttggagctatttagctcttataaaagaat 240  Q
             |||||||||||||||||||||||||||||||||||||||||    
T  11036624 gtgaatcacatttgttcctttttggagctatttagctcttataaaagaat 11036575  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 36255331 - 36255250
Alignment:
Q  14 ttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctat-tgtagcagtgttaatatattccatttttgcttgtt 95  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  36255331 ttcgttttaagtagtcttttcggtacaccttgtgctgaaagggctatatgt-gcagtgttaatataatccatttttgcttgtt 36255250  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 35836752 - 35836680
Alignment:
Q  23 agtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgtt 95  Q
    |||||| ||||||||||| |||||||||| ||| ||  | |||||||||||||||| | |||||||| |||||    
T  35836752 agtagtcttttcggtacatcttgtgctgagaggactgctatagcagtgttaatataattcatttttgtttgtt 35836680  T

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Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 38225731 - 38225647
Alignment:
Q  12 gtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  38225731 gtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattttagcagtgttaatataatccatttttgcttgttc 38225647  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 5598052 - 5598132
Alignment:
Q  15 tcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgtt 95  Q
    |||| ||||||||| ||||||||||| ||||||||||  |||||  | ||||||||||||||||||||||||||| |||||    
T  5598052 tcgttttaagtagtcttttcggtacatcttgtgctgagggggctgctttagcagtgttaatatattccatttttgtttgtt 5598132  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 28381517 - 28381441
Alignment:
Q  12 gtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccattttt 88  Q
    ||||||| || |||||| ||||||||||| |||||||||| ||||||  | ||||| |||||||||| |||||||||    
T  28381517 gtttcgtttttagtagtcttttcggtacatcttgtgctgagagggctgctttagcaatgttaatataatccattttt 28381441  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 46125514 - 46125542
Alignment:
Q  67 agtgttaatatattccatttttgcttgtt 95  Q
    |||||||||||||||||||||||||||||    
T  46125514 agtgttaatatattccatttttgcttgtt 46125542  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 46127748 - 46127776
Alignment:
Q  67 agtgttaatatattccatttttgcttgtt 95  Q
    |||||||||||||||||||||||||||||    
T  46127748 agtgttaatatattccatttttgcttgtt 46127776  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 39694026 - 39693942
Alignment:
Q  12 gtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  39694026 gtttcgtgctaagtagttttttcggtacaccttgtgctgaaagggctatttaagcagtgttaatatattccatttttgcttgttc 39693942  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 45166144 - 45166228
Alignment:
Q  12 gtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||    
T  45166144 gtttcgttttaagtagttttttcggtaaaccttgtgctgaaagggctattttagcaatgttaatataatccatttttgcctgttc 45166228  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 42964732 - 42964798
Alignment:
Q  30 ttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    ||||||||||| ||||||||||  |||||  | |||||||||||||||| |||||||||| ||||||    
T  42964732 ttttcggtacatcttgtgctgagggggctgctttagcagtgttaatataatccatttttgtttgttc 42964798  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 45977149 - 45977220
Alignment:
Q  23 agtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgt 94  Q
    |||||||||||||  | ||||||||||||   | ||||| |||||||||||||||| | |||||||||||||    
T  45977149 agtagttttttcgacaaaccttgtgctgaggagactattatagcagtgttaatataatacatttttgcttgt 45977220  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 6344281 - 6344311
Alignment:
Q  66 cagtgttaatatattccatttttgcttgttc 96  Q
    |||||||||||||||||||||||||||||||    
T  6344281 cagtgttaatatattccatttttgcttgttc 6344311  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 4311420 - 4311504
Alignment:
Q  12 gtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||    
T  4311420 gtttcgttttaagtagtcttttcgatacaccttgtgctgaaagggctattttagcagtgttaatataatccatttttgattgttc 4311504  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 8565254 - 8565326
Alignment:
Q  23 agtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgtt 95  Q
    |||||||||||||||||| |||||||||||||||||||| | | |||||||||||| ||||||||||||||||    
T  8565254 agtagttttttcggtacatcttgtgctgaaagggctatttttgaagtgttaatataatccatttttgcttgtt 8565326  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 39298059 - 39298142
Alignment:
Q  12 gtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgtt 95  Q
    ||||||| ||||||||| ||||||||||| |||||||||| ||||||  | |||||||||||||||| | |||||||| |||||    
T  39298059 gtttcgttttaagtagtcttttcggtacatcttgtgctgagagggctgctttagcagtgttaatataattcatttttgtttgtt 39298142  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 2208407 - 2208489
Alignment:
Q  12 gtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgtt 95  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  2208407 gtttcgtgctaagtagtttt-tcggtacaccttatgctgaaagggctatttaagcagtgttaatatattccatttttgcttgtt 2208489  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 6728363 - 6728447
Alignment:
Q  12 gtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    ||||||| ||||||||| ||||||||||| ||| |||||||||||||  | |||||||||||||||| |||||||||| ||||||    
T  6728363 gtttcgttttaagtagtcttttcggtacatcttatgctgaaagggctgctttagcagtgttaatataatccatttttgtttgttc 6728447  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 13415234 - 13415153
Alignment:
Q  15 tcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    |||| ||||||||| ||||||||||| |||||||||| ||||||  | ||| |||||||||||| |||||||||| ||||||    
T  13415234 tcgttttaagtagtcttttcggtacatcttgtgctgagagggctgctttagtagtgttaatataatccatttttgtttgttc 13415153  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 1467549 - 1467477
Alignment:
Q  23 agtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgtt 95  Q
    |||||| |||| ||||||||||||| ||| ||| || || ||||||||||||| || |||||||||| |||||    
T  1467549 agtagtctttttggtacaccttgtgttgagaggactgttatagcagtgttaatctaatccatttttgtttgtt 1467477  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 96
Target Start/End: Complemental strand, 36930683 - 36930654
Alignment:
Q  67 agtgttaatatattccatttttgcttgttc 96  Q
    ||||||||||||||||||||||||||||||    
T  36930683 agtgttaatatattccatttttgcttgttc 36930654  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 19982251 - 19982333
Alignment:
Q  12 gtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgt 94  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||||||| |||||||||||||||    
T  19982251 gtttcgttttaagtagttttttcggtactccttgtgttgaaagggctattttagcaatgttaatataatccatttttgcttgt 19982333  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 49549693 - 49549758
Alignment:
Q  31 tttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    |||||||| |||||||||||||||||||||  ||||||||||| ||||||| ||||||||||||||    
T  49549693 tttcggtataccttgtgctgaaagggctatcttagcagtgttattatattctatttttgcttgttc 49549758  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 6985455 - 6985375
Alignment:
Q  15 tcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgtt 95  Q
    |||| ||||||||| ||||||||||| |||||| |||  |||||  | ||||||||||||||||||||||||||| |||||    
T  6985455 tcgttttaagtagtcttttcggtacatcttgtgttgagtgggctgctttagcagtgttaatatattccatttttgtttgtt 6985375  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 8129491 - 8129424
Alignment:
Q  29 tttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    ||||||||||||  |||||||||  |||||  | ||||||||||||||||||||||||||| ||||||    
T  8129491 tttttcggtacattttgtgctgagtgggctgctttagcagtgttaatatattccatttttgtttgttc 8129424  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 95
Target Start/End: Original strand, 8437829 - 8437859
Alignment:
Q  65 gcagtgttaatatattccatttttgcttgtt 95  Q
    |||||||||||||||||||||||||||||||    
T  8437829 gcagtgttaatatattccatttttgcttgtt 8437859  T

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Target: scaffold0351 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 13591 - 13661
Alignment:
Q  25 tagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgtt 95  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  13591 tagttttttcggtacatcttgtgctgaaagggctatttttgcagtgttaatataatccatttttgcttgtt 13661  T

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Target: scaffold0750 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 5760 - 5687
Alignment:
Q  23 agtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    |||||| ||||||||||| ||||||||||  |||||  | ||||||||||||||||||||||||||| ||||||    
T  5760 agtagtcttttcggtacatcttgtgctgagtgggctgctttagcagtgttaatatattccatttttgtttgttc 5687  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 19163761 - 19163831
Alignment:
Q  22 aagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgctt 92  Q
    |||||||||||||| || |  ||||||||||| ||||||| | |||||||||||||| |||||||||||||    
T  19163761 aagtagttttttcgatatatattgtgctgaaaaggctatttttgcagtgttaatataatccatttttgctt 19163831  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 22878053 - 22878134
Alignment:
Q  15 tcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgttc 96  Q
    |||| ||||| ||| ||||||||||| |||||| |||  |||||  | || |||||||||||||||||||||||| ||||||    
T  22878053 tcgttttaagcagtcttttcggtacatcttgtgttgagggggctgctttaacagtgttaatatattccatttttgtttgttc 22878134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 17874450 - 17874366
Alignment:
Q  12 gtttcgtgttaagt-agttttttcggtacaccttgtgctgaaagggctattgtagcagtgttaatatattccatttttgcttgtt 95  Q
    ||||||| |||||| ||| ||||||||||| | |||||||| ||||||  | |||||||||||||||| || ||||||| |||||    
T  17874450 gtttcgttttaagttagtcttttcggtacatcatgtgctgagagggctgctttagcagtgttaatataatcaatttttgtttgtt 17874366  T

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