View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7258_low_5 (Length: 440)
Name: NF7258_low_5
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7258_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 15878281 - 15878509
Alignment:
| Q |
17 |
aggaagaaatgctgataatgcaacaaaagagattctataannnnnnnnnn-atgaaaggagatttcgaatgttgtgaggttcaagaaatgcaagtaaaat |
115 |
Q |
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| T |
15878281 |
aggaagaaatgctgattatgcaacaaaagagattctataagttttttttttatgaaaggagatttcgaaaattgtgaggtccaagaattgcaagtaaaat |
15878380 |
T |
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| Q |
116 |
ggaaatggagaaagatctagtgtgaaattagttatatcgtttctgggatgtaaataaagcatgatgatatactttatagtaagatttcttttagagaata |
215 |
Q |
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| T |
15878381 |
ggaaatggagaaagatctagtgtgaaattagttatatcgtttctgggatgtaaataaagcatgatgatatactttatagtaagatttcttttagaggata |
15878480 |
T |
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| Q |
216 |
ctttatagttggatgaataatgaaatgtt |
244 |
Q |
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| T |
15878481 |
ctttatagtaggatgaataatgcaatgtt |
15878509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 264 - 424
Target Start/End: Original strand, 15878613 - 15878773
Alignment:
| Q |
264 |
tgatccacacatcgtatatgattctactttaaattgtatctgtcaaataactttgttaggagtactccttatcacattaaattatactttgatttgtcac |
363 |
Q |
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| T |
15878613 |
tgatccacacatcgtatatgattctactttaaattgtatctgtcaaataactttgttaggggtactccttatcacattaaattatactttgatttgtcac |
15878712 |
T |
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| Q |
364 |
attaaattatgttggtcacctttaacttaacatgcattaagaatccaatgcctcttagttc |
424 |
Q |
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| T |
15878713 |
attaaattatgttggtcacctttaacttaacatgcattaagaatccaatgcctcttagttc |
15878773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 69 - 244
Target Start/End: Complemental strand, 15908460 - 15908285
Alignment:
| Q |
69 |
gaaaggagatttcgaatgttgtgaggttcaagaaatgcaagtaaaatggaaatggagaaagatctagtgtgaaattagttatatcgtttctgggatgt-a |
167 |
Q |
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| T |
15908460 |
gaaaagagattttgaaagtggtgaggt-caagaattgcaagtaaaatggaaatggagaaagatctagtgtgaacttagttatatcgtttctgggatgtaa |
15908362 |
T |
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| Q |
168 |
aataaagcatgatgatatactttatagtaagatttcttttagagaatactttatagttggatgaataatgaaatgtt |
244 |
Q |
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| T |
15908361 |
aataaagcatgatgatatactttatagtaagatttcttttagaggatacattatagtaggatgaataatgcaatgtt |
15908285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 69 - 244
Target Start/End: Complemental strand, 15891247 - 15891072
Alignment:
| Q |
69 |
gaaaggagatttcgaatgttgtgaggttcaagaaatgcaagtaaaatggaaatggagaaagatctagtgtgaaattagttatatcgtttctgggatgt-a |
167 |
Q |
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|||| ||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
15891247 |
gaaaagagattttgaaagttgtgaggttcaagaattgtaagtaaaatggaaatggagaaagatctagggtgaaattagttatatcgtttctgggatgtaa |
15891148 |
T |
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| Q |
168 |
aataaagcatgatgatatactttatagtaagatttcttttagagaatactttatagttggatgaataatgaaatgtt |
244 |
Q |
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| T |
15891147 |
aacaaagcatgatgatatactttatagtaaga-ttctttgagaggatactttatagtaggatgaataatgcaatgtt |
15891072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 15908148 - 15908065
Alignment:
| Q |
264 |
tgatccacacatcgtatatga-ttctactttaaattgtatctgtcaaataactttgttaggagtactccttatcacattaaatt |
346 |
Q |
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| T |
15908148 |
tgatccacacattgtatatgaattctactttaaattgtatctatcaaataactttgttaagggtacaccttatcacattaaatt |
15908065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 15878524 - 15878560
Alignment:
| Q |
235 |
atgaaatgtttttattcatacctagtttctgatccac |
271 |
Q |
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| T |
15878524 |
atgaaatgtttttattcatacctagtttctaatccac |
15878560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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