View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7258_low_7 (Length: 370)

Name: NF7258_low_7
Description: NF7258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7258_low_7
NF7258_low_7
[»] chr6 (16 HSPs)
chr6 (17-352)||(26848223-26848558)
chr6 (34-85)||(26811169-26811220)
chr6 (34-84)||(26861117-26861167)
chr6 (34-85)||(26974611-26974662)
chr6 (34-85)||(27310311-27310362)
chr6 (30-85)||(26616962-26617017)
chr6 (35-82)||(26635248-26635295)
chr6 (30-85)||(26722890-26722945)
chr6 (35-82)||(26741214-26741261)
chr6 (34-73)||(27317676-27317715)
chr6 (34-73)||(27581275-27581314)
chr6 (34-83)||(26958799-26958848)
chr6 (34-83)||(27667862-27667911)
chr6 (263-308)||(27214232-27214277)
chr6 (263-308)||(27234951-27234996)
chr6 (130-203)||(26974704-26974779)
[»] chr2 (1 HSPs)
chr2 (34-207)||(17994141-17994307)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 26848223 - 26848558
Alignment:
Q  17 tgaagtaacaaagaaagataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgattaatttgattgttttagcaaaaagttatagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26848223 tgaagtaacaaagaaagataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgattaatttgattgttttagcaaaaagttatagt 26848322  T
Q  117 gggagaaaaaacaaggtggtacaataattgtgactggtccacacggctagagaaaaatgagaaggaggtttcgtgactaatgttaaatgcacaacactga 216  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26848323 gggagaaaaaacaaggtggtacaataattatgactggtccacacggctagaggaaaatgagaaggaggtttcgtgactaatgttaaatgcacaacactga 26848422  T
Q  217 taatctaccttcccagnnnnnnnnaacagatccgagaataacacaacactatcatttcttctcatggctgtgcaatcaccttcttcttcttcctctttgt 316  Q
    ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26848423 taatctaccttcccagttttttttaacagatccgagaataacacaacactatcatttcttctcatggctgtgcaatcaccttcttcttcttcctctttgt 26848522  T
Q  317 cttcctcttcctccaataatttcaactatgatgtgt 352  Q
    |||||||||||| |||||||||||||||||||||||    
T  26848523 cttcctcttcctgcaataatttcaactatgatgtgt 26848558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 26811169 - 26811220
Alignment:
Q  34 ataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgat 85  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26811169 ataatggttctgcaatgattttcactaaagaaaaagttgaacaataattgat 26811220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 26861117 - 26861167
Alignment:
Q  34 ataatggttctgcaatgattttcactaaagaaaaagttgagcaataattga 84  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  26861117 ataatggttctgcaatgattttcattaaagaaaaagttgatcaataattga 26861167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 26974611 - 26974662
Alignment:
Q  34 ataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgat 85  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||||||    
T  26974611 ataatggttctgcaatgagtttcacaaaagaaaaagttgaacaataattgat 26974662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 27310362 - 27310311
Alignment:
Q  34 ataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgat 85  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||    
T  27310362 ataatggttcttcaatgattttcactaaagaaaaagttgaacgataattgat 27310311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 26616962 - 26617017
Alignment:
Q  30 aaagataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgat 85  Q
    |||||||||||||||||| |||||||||| | || ||||||||| |||||||||||    
T  26616962 aaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 26617017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 26635248 - 26635295
Alignment:
Q  35 taatggttctgcaatgattttcactaaagaaaaagttgagcaataatt 82  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  26635248 taatggttctgcaatgagtttcacaaaagaaaaagttgaacaataatt 26635295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 26722890 - 26722945
Alignment:
Q  30 aaagataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgat 85  Q
    |||||||||||||||||| |||||||||| | || ||||||||| |||||||||||    
T  26722890 aaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 26722945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 26741214 - 26741261
Alignment:
Q  35 taatggttctgcaatgattttcactaaagaaaaagttgagcaataatt 82  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  26741214 taatggttctgcaatgagtttcacaaaagaaaaagttgaacaataatt 26741261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 27317715 - 27317676
Alignment:
Q  34 ataatggttctgcaatgattttcactaaagaaaaagttga 73  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  27317715 ataatggttcttcaatgattttcactaaagaaaaagttga 27317676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 27581314 - 27581275
Alignment:
Q  34 ataatggttctgcaatgattttcactaaagaaaaagttga 73  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  27581314 ataatggttcttcaatgattttcactaaagaaaaagttga 27581275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 26958799 - 26958848
Alignment:
Q  34 ataatggttctgcaatgattttcactaaagaaaaagttgagcaataattg 83  Q
    |||||||||||| ||||| |||||| |||||||||||||| |||||||||    
T  26958799 ataatggttctgtaatgagtttcacaaaagaaaaagttgaacaataattg 26958848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 27667911 - 27667862
Alignment:
Q  34 ataatggttctgcaatgattttcactaaagaaaaagttgagcaataattg 83  Q
    |||||||||||||| || |||||| ||||||||||||||| |||||||||    
T  27667911 ataatggttctgcagtgtttttcagtaaagaaaaagttgaacaataattg 27667862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 27214232 - 27214277
Alignment:
Q  263 cactatcatttcttctcatggctgtgcaatcaccttcttcttcttc 308  Q
    |||||||||||| |||||||||| ||||| ||||||||||| ||||    
T  27214232 cactatcatttcctctcatggctatgcaaccaccttcttctacttc 27214277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 27234996 - 27234951
Alignment:
Q  263 cactatcatttcttctcatggctgtgcaatcaccttcttcttcttc 308  Q
    |||||||||||| |||||||||| ||||| ||||||||||| ||||    
T  27234996 cactatcatttcctctcatggctatgcaaccaccttcttctacttc 27234951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 26974704 - 26974779
Alignment:
Q  130 aggtggtacaataattgtg--actggtccacacggctagagaaaaatgagaaggaggtttcgtgactaatgttaaa 203  Q
    |||||||| ||||||||||  |||||||||||||| |  || |||||| |||||| ||||||  ||||||||||||    
T  26974704 aggtggtaaaataattgtgtgactggtccacacggatgtagtaaaatgtgaaggaagtttcgctactaatgttaaa 26974779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 17994307 - 17994141
Alignment:
Q  34 ataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgattaatttgattgttttagcaaaaagttatagtgggagaaaaaacaaggt 133  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |          ||||||||||||| |  ||||||| |||||  ||||    
T  17994307 ataatggttctgcaatgattttcagtaaagaaaaagttgaacaataattgatga---------ctttagcaaaaagtgactgtgggaggaaaaatgaggt 17994217  T
Q  134 ggtacaataat--tgtgactggtccacacggctagagaaaaatgagaaggaggtttcgtgactaatgttaaatgca 207  Q
     || |||||||  ||||||||||||||||||||| || | ||||||||||| ||||||  ||| ||||||||||||    
T  17994216 agtgcaataattgtgtgactggtccacacggctataggagaatgagaaggaagtttcgccactgatgttaaatgca 17994141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University