View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7259_low_1 (Length: 399)

Name: NF7259_low_1
Description: NF7259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7259_low_1
NF7259_low_1
[»] chr6 (3 HSPs)
chr6 (123-388)||(31058866-31059131)
chr6 (24-127)||(31058630-31058730)
chr6 (235-348)||(29142149-29142263)
[»] chr4 (3 HSPs)
chr4 (161-388)||(55781338-55781566)
chr4 (161-388)||(55845518-55845746)
chr4 (235-322)||(9605411-9605499)
[»] chr8 (1 HSPs)
chr8 (242-317)||(8510602-8510678)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 123 - 388
Target Start/End: Original strand, 31058866 - 31059131
Alignment:
Q  123 aaaataagtcacccttaaattcatgccatgnnnnnnnggaaacaaaccaaaactaacgcagccactttagcatactaaacaatgactacccaaaacagct 222  Q
    ||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058866 aaaataagtcacccttaaattcatgccatgtttttttggaaacaaatcaaaactaacgcagccactttagcatactaaacaatgactacccaaaacagct 31058965  T
Q  223 gacccaatagactatttaccaatcatgaaggcgcattgtagtttatgcttattctatctactttattatccaaagcaaataaagcttttatgatggtgca 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058966 gacccaatagactatttaccaatcatgaaggcgcattgtagtttatgcttattctatctactttattatccaaagcaaataaagcttttatgatggtgca 31059065  T
Q  323 atgaagttgaattgttatccatcatagcacaacacataagcttagacttgaaactttgattttctt 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31059066 atgaagttgaattgttatccatcatagcacaacacataagcttagactttaaactttgattttctt 31059131  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 31058630 - 31058730
Alignment:
Q  24 aaccaaaaacatagttcatagcagaatgatatatatatggaaaagaatacattagaaaggtcaaattcataaaggattctaaccagggaaaatgatttaa 123  Q
    |||||||||||| |||||||||||||||||||  |||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||     
T  31058630 aaccaaaaacat-gttcatagcagaatgatat--atatggaaaaaaatacattagaagggtcaaattcataaaggattctaatcagggaaaatgatttac 31058726  T
Q  124 aaat 127  Q
    ||||    
T  31058727 aaat 31058730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 348
Target Start/End: Complemental strand, 29142263 - 29142149
Alignment:
Q  235 tatttaccaatcatgaaggcgcattgtagtttatgcttattctatct-actttattatccaaagcaaataaagcttttatgatggtgcaatgaagttgaa 333  Q
    |||||| |||||||||||  ||||| | ||||||||||||||||||| || ||||||||||| |||||| ||||| |||||||||||||  | |||||||    
T  29142263 tatttaacaatcatgaagctgcattattgtttatgcttattctatcttacattattatccaatgcaaattaagctgttatgatggtgcagaggagttgaa 29142164  T
Q  334 ttgttatccatcata 348  Q
    ||  |||||||||||    
T  29142163 tttctatccatcata 29142149  T

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Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 161 - 388
Target Start/End: Original strand, 55781338 - 55781566
Alignment:
Q  161 gaaacaaaccaaaactaacgcagccactttagcatactaaacaatgactacccaaaacagctgacccaatagactatttaccaatcatgaaggcgcattg 260  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  55781338 gaaacaaaccaagactaacgcagccactttagcatactaaacaatgactacccgtaacagctgacccaatagactatttaccaatcatgaaggtgcattg 55781437  T
Q  261 tagtttatgcttattctatc-tactttattatccaaagcaaataaagcttttatgatggtgcaatgaagttgaattgttatccatcatagcacaacacat 359  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55781438 tagtttatgcttattcaatcatactttattatccaaagcaagtaaagctttcatgatggtgcaatgaagttgaattgttatccatcatagcacaacacat 55781537  T
Q  360 aagcttagacttgaaactttgattttctt 388  Q
    |||||||||||||||||||||||||||||    
T  55781538 aagcttagacttgaaactttgattttctt 55781566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 161 - 388
Target Start/End: Original strand, 55845518 - 55845746
Alignment:
Q  161 gaaacaaaccaaaactaacgcagccactttagcatactaaacaatgactacccaaaacagctgacccaatagactatttaccaatcatgaaggcgcattg 260  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  55845518 gaaacaaaccaagactaacgcagccactttagcatactaaacaatgactacccgtaacagctgacccaatagactatttaccaatcatgaaggtgcattg 55845617  T
Q  261 tagtttatgcttattctatc-tactttattatccaaagcaaataaagcttttatgatggtgcaatgaagttgaattgttatccatcatagcacaacacat 359  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55845618 tagtttatgcttattcaatcatactttattatccaaagcaagtaaagctttcatgatggtgcaatgaagttgaattgttatccatcatagcacaacacat 55845717  T
Q  360 aagcttagacttgaaactttgattttctt 388  Q
    |||||||||||||||||||||||||||||    
T  55845718 aagcttagacttgaaactttgattttctt 55845746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 9605411 - 9605499
Alignment:
Q  235 tatttaccaatcatgaaggcgcattgtagtttatgcttattctatct-actttattatccaaagcaaataaagcttttatgatggtgca 322  Q
    |||||| |||||| |||||  |||| ||||| || | ||||| |||| |||||||||||||| || ||| ||||| |||||||||||||    
T  9605411 tatttaacaatcaagaaggttcattatagttaatacctattcaatcttactttattatccaatgctaattaagctgttatgatggtgca 9605499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 8510602 - 8510678
Alignment:
Q  242 caatcatgaaggcgcattgtagtttatgcttattctatc-tactttattatccaaagcaaataaagcttttatgatg 317  Q
    |||||||||||| ||||| |||||||||||||||||||| |  |||||||||||  | |||| || |||||||||||    
T  8510602 caatcatgaaggtgcattttagtttatgcttattctatctttttttattatccagtggaaattaaacttttatgatg 8510678  T

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