View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7260_low_2 (Length: 365)
Name: NF7260_low_2
Description: NF7260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7260_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 26639687 - 26639356
Alignment:
| Q |
18 |
tggatggattgaaagagcatgcttactaatcaatttgattaatgagaaagagagaagnnnnnnnntacttcaatgagaaagaagaaaatatagacctggc |
117 |
Q |
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| T |
26639687 |
tggatggattgaaagagcatgcttactaatcaatttgattaatgagaaagagagaagaaaaaaaatacttcaatgagaaagaagaaaatatagacctggc |
26639588 |
T |
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| Q |
118 |
atcgatgatttcaagcaacttgctctgatatttgttacctaggacctgatcaatcaattagtgatatggtgaaatcagaaattcaacattacttcaaact |
217 |
Q |
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| T |
26639587 |
atcgatgatttcaagcaacttgctctgatatttgttacctaggacctgatcaatcaattagtaatatggtgaaatcagaaattcaacattacttcaaact |
26639488 |
T |
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| Q |
218 |
gttaagtatatnnnnnnnnnnntatacaaattaaaaatcttacgtggattttcgaggtggtcttgggatcaaggaaggacttaacagtgttccacaaaat |
317 |
Q |
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| T |
26639487 |
gttaagtatataaaaaaaaaaa-atacaaattaaaaatcttacgtggattttcgaggtagtcttgggatcaaggaaggacttaacagtgttccacaaaat |
26639389 |
T |
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| Q |
318 |
cctaaatcccgaaccagcattgatgatgaacat |
350 |
Q |
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| T |
26639388 |
cctaaatcccgaaccagcattgatgatgaacat |
26639356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 5327887 - 5327793
Alignment:
| Q |
256 |
cttacgtggattttcgaggtggtcttgggatcaaggaaggacttaacagtgttccacaaaatcctaaatcccgaaccagcattgatgatgaacat |
350 |
Q |
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| T |
5327887 |
cttacatggatttttgaggtggtcttgggatctaggaatgactttacagtgttccacaatagcctaaatccagaaccagcattgatgatgaacat |
5327793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 5328057 - 5327972
Alignment:
| Q |
86 |
ttcaatgagaaagaagaaaatatagacctggcatcgatgatttcaagcaacttgctctgatatttgttacctaggacctgatcaat |
171 |
Q |
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| T |
5328057 |
ttcaatgagaaaggagataaattttacctggcatcaattacttcaagcaacttgctctggtatttgttacctaggacctggtcaat |
5327972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 54774049 - 54773955
Alignment:
| Q |
256 |
cttacgtggattttcgaggtggtcttgggatcaaggaaggacttaacagtgttccacaaaatcctaaatcccgaaccagcattgatgatgaacat |
350 |
Q |
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| T |
54774049 |
cttacatggatttttgaggtggtcttgggatctaggaatgactttacagtgttccacaatagcctaaatccagaaccagcattgatgatgaacat |
54773955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 54774219 - 54774134
Alignment:
| Q |
86 |
ttcaatgagaaagaagaaaatatagacctggcatcgatgatttcaagcaacttgctctgatatttgttacctaggacctgatcaat |
171 |
Q |
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| T |
54774219 |
ttcaatgagaaaggagataaattttacctggcatcaattacttcaagcaacttgctctggtatttgttacctaggacctggtcaat |
54774134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 8071092 - 8071015
Alignment:
| Q |
274 |
gtggtcttgggatcaaggaaggacttaacagtgttccacaaaatcctaaatcccgaaccagcattgatgatgaacatg |
351 |
Q |
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| T |
8071092 |
gtggtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatgaacatg |
8071015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 32616386 - 32616475
Alignment:
| Q |
262 |
tggattttcgaggtggtcttgggatcaaggaaggacttaacagtgttccacaaaatcctaaatcccgaaccagcattgatgatgaacatg |
351 |
Q |
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| T |
32616386 |
tggatttttgcggtggtctttgggtcaaggaaagatttaacagtgttccacaacattctgaatccagaacctgcattgatgatgaacatg |
32616475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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