View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7262_low_2 (Length: 452)
Name: NF7262_low_2
Description: NF7262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7262_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 10062453 - 10062024
Alignment:
| Q |
13 |
atgccttgatgaaagtttcttttcacgacatggtcaa-ttttaggcctagtccaccactcactaggtannnnnnn-atgcattctcacgcttcttgtgtc |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||| |||||| ||||| |||| |
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| T |
10062453 |
atgccttgatgaaagtttcttttcacgacatggtcaacttttaggcctagtcca----tcacttggtattttctttatgcatgctcacgtttcttatgtc |
10062358 |
T |
|
| Q |
111 |
actataaatatacatatcaatttccatacattagcaacacaaataaatcctcataacccatt--------tactagtcacttatcaataatcattaaatt |
202 |
Q |
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|||||||||||||||||||| | |||||||| ||||||||||| | ||| |||||||| | ||||||||||||||||||||||||||| | |
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| T |
10062357 |
tctataaatatacatatcaatgtacatacattcacaacacaaatacaacctaataacccaataatttccttactagtcacttatcaataatcattaattg |
10062258 |
T |
|
| Q |
203 |
cttattaaaaatgtcctcacataggtatttctcaatgttcttccatgcaatagtgttagcatctcttgcaacaacaacattttcagcactcacaacaaat |
302 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||| |
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| T |
10062257 |
cttagtaaaaatgtcctcacataggtatttctcaatgttcttccatgcaatagtgttagcagcacttgcaaccaaaacattttcagcactcacaacaaat |
10062158 |
T |
|
| Q |
303 |
tactatgattacacatgccctaatgcattgagcactattagaagtgttgttgaagctgcagttcaaagagagaaccgtatgggtggctctttactacgct |
402 |
Q |
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| T |
10062157 |
tattatgactacacatgccctaatgctttgagcactattagaagtgttgttgaagctgcagttgaaaaagagaatcgtatgggtggctctttactacgct |
10062058 |
T |
|
| Q |
403 |
tgcattttcacgattgctttgttaatgtaagatt |
436 |
Q |
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| T |
10062057 |
tgcattttcatgattgctttgttaatgtaagatt |
10062024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 198 - 434
Target Start/End: Complemental strand, 10068122 - 10067886
Alignment:
| Q |
198 |
aaattcttattaaaaatgtcctcacataggtatttctcaatgttcttccatgcaatagtgttagcatctcttgcaacaacaacattttcagcactcacaa |
297 |
Q |
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||||||||| ||||||||||||||||||||| |||||||| ||||||| | || ||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
10068122 |
aaattcttagtaaaaatgtcctcacataggtttttctcaaagttcttctacacattagtgttagcaactcttacaacaacaacattttcagcactcacaa |
10068023 |
T |
|
| Q |
298 |
caaattactatgattacacatgccctaatgcattgagcactattagaagtgttgttgaagctgcagttcaaagagagaaccgtatgggtggctctttact |
397 |
Q |
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| T |
10068022 |
caaattactatgattacacatgccctaatgctttgagcactattaaaagtgttgttaaagctgcagttcaaagagagaaccgtatgggtgcttctttact |
10067923 |
T |
|
| Q |
398 |
acgcttgcattttcacgattgctttgttaatgtaaga |
434 |
Q |
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| T |
10067922 |
acgcttgcactttcatgattgctttgttaatgtaaga |
10067886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 10068275 - 10068125
Alignment:
| Q |
16 |
ccttgatgaaagtttcttttcacgacatggtcaatttta-ggcctagtccaccactcactaggtannnnnnnatgcattctcacgcttcttgtgtcacta |
114 |
Q |
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||||||||||||||||||| |||||||| ||||||||| |||||| ||||| |||||||||||| |||||| |||||| |||||||||||||| |
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| T |
10068275 |
ccttgatgaaagtttctttccacgacatagtcaattttttggcctattccactactcactaggtatttttttatgcatgctcacgtttcttgtgtcacta |
10068176 |
T |
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| Q |
115 |
taaatatacatatcaatttccatacattagcaacacaaataaatcctcata |
165 |
Q |
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||||||||||||||||| || || ||||| ||||||||||||||||||||| |
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|
| T |
10068175 |
taaatatacatatcaatgtctattcattatcaacacaaataaatcctcata |
10068125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 234 - 428
Target Start/End: Complemental strand, 39293421 - 39293227
Alignment:
| Q |
234 |
tcaatgttcttccatgcaatagtgttagcatctcttgcaacaacaacattttcagcactcacaacaaattactatgattacacatgccctaatgcattga |
333 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||| |
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| T |
39293421 |
tcaatgttcttccacacaatagtgttagcagctcttgcaacaacaacattttcagcactcacaacaaattactatgactacacataccttaatgctttga |
39293322 |
T |
|
| Q |
334 |
gcactattagaagtgttgttgaagctgcagttcaaagagagaaccgtatgggtggctctttactacgcttgcattttcacgattgctttgttaat |
428 |
Q |
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| T |
39293321 |
gtactattagaagtgttgttaaagctgcagttcaaagagagaaccgtatgggtgcttctttactacgcttgcactttcatgattgctttgttaat |
39293227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 234 - 428
Target Start/End: Original strand, 8358222 - 8358416
Alignment:
| Q |
234 |
tcaatgttcttccatgcaatagtgttagcatctcttgcaacaacaacattttcagcactcacaacaaattactatgattacacatgccctaatgcattga |
333 |
Q |
| |
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|||||||||||||| |||||||||||| | |||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
8358222 |
tcaatgttcttccacacaatagtgttagaagctcttgcagcagcaacattttcagcactcacaacaaattactatgactacacatgccctaatgctttga |
8358321 |
T |
|
| Q |
334 |
gcactattagaagtgttgttgaagctgcagttcaaagagagaaccgtatgggtggctctttactacgcttgcattttcacgattgctttgttaat |
428 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |
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| T |
8358322 |
gcactattagaagtgttgttaaagctgcagttcaatgagagaaccgtatgggtgcttctttactacgcttgcactttcatgattgctttgttaat |
8358416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 8358146 - 8358218
Alignment:
| Q |
48 |
aattttaggcctagtccaccactcactaggtannnnnnnatgcattctcacgcttcttgtgtcactataaatat |
121 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
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| T |
8358146 |
aattttaggcctagtccaccactcactaggta-tttttaatgcatgctcacgtgtcttgtgtcactataaatat |
8358218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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