View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7263_high_2 (Length: 452)
Name: NF7263_high_2
Description: NF7263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7263_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 82 - 433
Target Start/End: Complemental strand, 47157269 - 47156918
Alignment:
| Q |
82 |
gcaggattagttaatgctaactgtgtcccccctgtcaaaggtcgagtaccagtatttgtcattaactggatttaagatagtgacacatatcagaagacaa |
181 |
Q |
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| T |
47157269 |
gcaggtttagttaatgctaactctgtcccccctgtcaaaggtcgagtaccagtatttgtcattaactggatttaagatagtgacacatatcagaagacaa |
47157170 |
T |
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| Q |
182 |
caccatgtactggcccaagcccaccaccagcagcccattgaatactcatcccgtgctacatgtgaacaatcctttggaaaatttcaatgacaaacaagtg |
281 |
Q |
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| T |
47157169 |
caccatgtactggcccaagcccaccaccaccagcccattgaatactcatcccgtgctacatgtgaacaatcctttggaaaatttcaatgacaaacaagtg |
47157070 |
T |
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| Q |
282 |
aattaatttctcattacatttctttgagnnnnnnntatcacattctgtttgatattttgtagaatttacctctcctttgctgtgaggttggggcagcaga |
381 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47157069 |
aattaatttctcattacatttctttgagaaaaaaatatcacattctgtttgatattttgtagaatttacctctcctttgctgtgaggttggggcagcaga |
47156970 |
T |
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| Q |
382 |
gaatagacgggtccttgtccttctttaccattataacaatcacgcaatattg |
433 |
Q |
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| T |
47156969 |
gaatagacgggtccttgtccttctttaccattataacaatcacgcaatattg |
47156918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47157371 - 47157308
Alignment:
| Q |
1 |
tgattttacatatggaaatggttccctttctcacttcatggtccattgttcacacaaagacaat |
64 |
Q |
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| T |
47157371 |
tgattttacatatggaaatggttccctttctcacttcatggtccattgttcacacaaagacaat |
47157308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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