View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7263_low_1 (Length: 841)
Name: NF7263_low_1
Description: NF7263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7263_low_1 |
 | |
|
| [»] scaffold0384 (1 HSPs) |
| | |
|
| [»] scaffold0294 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 13 - 704
Target Start/End: Complemental strand, 15756014 - 15755312
Alignment:
| Q |
13 |
aacctgtgttttcacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
15756014 |
aacctgtgttttcacaactccaaaattatcattcaaaccagtgagaaattgaatgatttggtcctccaaacgaaaatttcgagctgatctcatggattca |
15755915 |
T |
|
| Q |
113 |
cagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaat |
212 |
Q |
| |
|
|| |||||||||||||||||||| || |||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
15755914 |
caacgacagggatgaggacaagtgcacataggcataggacaatgagaattaagctcttcccaaagtgatttcaactcagtgaagtattcaagcacaaact |
15755815 |
T |
|
| Q |
213 |
tggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15755814 |
tggttccttgtttcaaattgttgatagtagtacataatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaat |
15755715 |
T |
|
| Q |
313 |
ggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttacaacg---------------- |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
15755714 |
ggcgtattcatgaaatacgatggtttgagcgatttaaggagaaacagaattcagaatccaagaatggatcaaggagttacaacgttcccaaacacttcga |
15755615 |
T |
|
| Q |
397 |
ttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggt |
496 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
15755614 |
ttcaaatcatcaagaggagggattaggatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcgtttcatagaatgatgc----cgaggt |
15755519 |
T |
|
| Q |
497 |
agttagaaccgtcaagaagaggcgtaactaacacagagccaggattttcacttggatgcacgtagtaaggtgaatcagtgttccgttgaaccacttgagg |
596 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
15755518 |
agttagaaccgtcaagaagaggtgtaactaaca-agagccaggattttcacttggatgcatgtagtaaggtgaatcagtgtttggttgaacaacttgagg |
15755420 |
T |
|
| Q |
597 |
agcttgtcttggaggcatgatgaagacgaggcagaaagtagtaaaattgagaaaatagagtatgaagaaagacgaaggcgatgatacgtgaaacagtgaa |
696 |
Q |
| |
|
| ||| ||||||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||| | |||||| ||||| |
|
|
| T |
15755419 |
atcttctcttggaggcatgatgaggacgaagcagagagtagtagaattgagaaaacagagtatgaagaaagccgaaggcgatgatgcatgaaacggtgaa |
15755320 |
T |
|
| Q |
697 |
acgaagaa |
704 |
Q |
| |
|
|||||||| |
|
|
| T |
15755319 |
acgaagaa |
15755312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 694 - 814
Target Start/End: Complemental strand, 15755270 - 15755150
Alignment:
| Q |
694 |
gaaacgaagaataatcggtgtcattcttcacgaaatcgagatgaattgagaaaagatgaaaatcttgaagttcacgcatcaatggcagaagctaactgaa |
793 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
15755270 |
gaaacgaagaagaatcggtgtgattcttcacgaaatcgagatgaattgagaaaagatgaaaagcttgaagttcacgcatcaatggtgaaagctaactgaa |
15755171 |
T |
|
| Q |
794 |
tcgtaacaaactcttctcaag |
814 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15755170 |
tcgtaacaaactcttctcaag |
15755150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 23 - 348
Target Start/End: Original strand, 18945565 - 18945889
Alignment:
| Q |
23 |
ttcacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacagg |
122 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||||||||||| | ||| || |||| |||||| |||| | |||||||||||||| || || | |
|
|
| T |
18945565 |
ttcacaactgaaaaattgtcattcaaaccagtgagaaattgaatcacttgatcttccattctaaaattgcgagcagtacgcatggattcacaacggcatg |
18945664 |
T |
|
| Q |
123 |
gatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttg |
222 |
Q |
| |
|
||| ||||||||| || |||| ||| ||| ||||| | |||||||| |||||||| ||||||| ||| |||||||| ||||| || | || || || |
|
|
| T |
18945665 |
gataaggacaagtacacataggcatggga-gatgagagttaagctcctcccaaagggatttcatctctgtgaagtaatcaagttcagatttatcaccctg |
18945763 |
T |
|
| Q |
223 |
tttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattca |
322 |
Q |
| |
|
||||||||||||||| | || ||| | ||||| || | | || ||||||||| ||||| |||||||| |||||||| ||||||||| ||| ||| |
|
|
| T |
18945764 |
tttcaaattgttgattgaagaacgaagtgaagcaacacaaattcgatcaaccttcgaaaaacgttcttgtgattcaatccaaacatcaatgttgtactca |
18945863 |
T |
|
| Q |
323 |
tgaaatacgatggtttgagcgatttg |
348 |
Q |
| |
|
||||| || || |||||||| ||||| |
|
|
| T |
18945864 |
tgaaacacaatagtttgagcaatttg |
18945889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 161; Significance: 2e-85; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 1352 - 972
Alignment:
| Q |
13 |
aacctgtgttttcacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattca |
112 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||| ||| || |||||||| | ||||||||||||| |||| | | | | ||| | ||| |||||| |
|
|
| T |
1352 |
aacctgagttttcacaactccaaagttgtcattcaaaccagttaggaattgaatcacttggtcctccaaacgaaattctcgtgttgacctcatagattca |
1253 |
T |
|
| Q |
113 |
cagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaat |
212 |
Q |
| |
|
|| ||| |||||||||||||||| || | || |||||| ||||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||| | |
|
|
| T |
1252 |
caacgatagggatgaggacaagtacacacaggcatagggcgatgggaattgagctcttcccaaagagatttcatctcagtgaagtattcaagcacaaact |
1153 |
T |
|
| Q |
213 |
tggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaat |
312 |
Q |
| |
|
| |||| |||||||||||||||||||| | ||||||||||| |||| ||| | ||||||| || || || |||||||||||||||||||| |||||||| |
|
|
| T |
1152 |
ttgttcgttgtttcaaattgttgatagatgaacgtaatgaagcaattatgattatatcaactttggagaaacgttcttgaagctcaatccaaacatcaat |
1053 |
T |
|
| Q |
313 |
ggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttaca |
393 |
Q |
| |
|
||| ||||||||||||||||| |||||||| ||||| ||||||||||||| | ||||||||||| | || ||||||||| |
|
|
| T |
1052 |
ggcatattcatgaaatacgatagtttgagcaatttgtggagaaacaaaattgatgatccaagaatgaaccatgtagttaca |
972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 1e-43; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 294 - 622
Target Start/End: Complemental strand, 17118497 - 17118153
Alignment:
| Q |
294 |
gctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttaca |
393 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| || || ||||| ||||||||||||||| | | || ||||||| |||||| || ||||||||| |
|
|
| T |
17118497 |
gctcaatccatacatcaatggtatattcatggaatactatagtctgagcaatttgaggagaaacagagttcaaaatccaaaaatggatcaggtagttaca |
17118398 |
T |
|
| Q |
394 |
---------------acg-ttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcata |
477 |
Q |
| |
|
||| ||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| || ||||| | || |||||| |
|
|
| T |
17118397 |
gtgttcccaagcactacggttcaaatcatcaataggagggattggaattgatccatcaacaaaggaaagtttgttcttcgctcctaatgggcgcttcata |
17118298 |
T |
|
| Q |
478 |
gaacgatgccatgcgaggtagttagaaccgtcaagaagaggcgtaactaacacagagccaggattttcacttggatgcacgtagtaaggtgaatcagtgt |
577 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| ||| || |||| | |||||||| || || ||||||||||||| |
|
|
| T |
17118297 |
gaacgatgccatgcgaggtagttagaaccatcaagaagaggtgtaactatcacatagcttggtccttcattaggatgcacataatacggtgaatcagtgt |
17118198 |
T |
|
| Q |
578 |
tccgttgaaccacttgaggagcttgtcttggaggcatgatgaaga |
622 |
Q |
| |
|
| |||||| | ||||||||||| | ||||| |||||||||| |
|
|
| T |
17118197 |
ttgattgaacaatctgaggagcttgacgaggagggatgatgaaga |
17118153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 216 - 393
Target Start/End: Complemental strand, 17118693 - 17118516
Alignment:
| Q |
216 |
ttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggc |
315 |
Q |
| |
|
||||||| ||||| ||||| || ||| | |||| ||||||||| | |||||| |||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
17118693 |
ttccttgcttcaagttgttaatgacagaatgtaaagaagaaattattactctaccaaccttagagaggcgttcttgaagctcaatccatacatcaatggc |
17118594 |
T |
|
| Q |
316 |
gtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttaca |
393 |
Q |
| |
|
||||||||| ||||| || || ||||| |||||| |||||||| | | || |||||||||||||| || ||||||||| |
|
|
| T |
17118593 |
gtattcatggaatactatagtctgagcaatttgacgagaaacagagttcaaaatccaagaatggatcaggtagttaca |
17118516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 20 - 577
Target Start/End: Original strand, 13139393 - 13139970
Alignment:
| Q |
20 |
gttttcacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgac |
119 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||| ||||||| || |||| ||| ||||||| ||| | |||| |||||||||||| |||| |
|
|
| T |
13139393 |
gttttcataactccaaaattctcattcaagtcagtgagaaactgaatgacctgaacctctaaacgaaaattatgaaccgatctcatggattcacaacgac |
13139492 |
T |
|
| Q |
120 |
agggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttcc |
219 |
Q |
| |
|
| ||||||||| |||| || |||| || || |||||| |||| || |||| ||||| |||| || |||||| ||||| ||||||||| | || ||||| |
|
|
| T |
13139493 |
aaggatgaggataagtgcacataggtattgggcgatgagaattgagttcttaacaaagagattacatctcagtaaagtaatcaagcacatattttgttcc |
13139592 |
T |
|
| Q |
220 |
ttgtttcaaattgttgatagcagtacgta----at----------gaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccata |
305 |
Q |
| |
|
||||||||| ||||||| |||| | | || || |||| |||||| ||||||||||| ||||| || |||||||||||||||||||| | |
|
|
| T |
13139593 |
ttgtttcaagttgttga-agcaattcttaccctatcaacattagagaagcaattcttactctatcaacattagagaaacgttcttgaagctcaatccaga |
13139691 |
T |
|
| Q |
306 |
catcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttacaac---------- |
395 |
Q |
| |
|
|| |||||| |||||||||||| || | | | |||||||||||| ||| || |||||||||||||| ||| ||||| |||| |
|
|
| T |
13139692 |
caacaatggtgtattcatgaaacacta---------cagtctgaggagaaacagaattcaaaatccaagaatggatcaaatagttccaacattcccatgg |
13139782 |
T |
|
| Q |
396 |
------gttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccat |
489 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||||| ||| |||||||| || || || | | ||||||||||||| ||| |
|
|
| T |
13139783 |
gctacgattcaaatcatcagcaggagggattggaattgatccatcaacaaaatcaagtttgttcttcgctcccaactcacgcttcatagaacgatttcat |
13139882 |
T |
|
| Q |
490 |
gcgaggtagttagaaccgtcaagaagaggcgtaactaacacagagccaggattttcacttggatgcacgtagtaaggtgaatcagtgt |
577 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |||| || ||| |||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
13139883 |
gcgaggtagttggaaccatcaagaagaggcgtaactagcacaaagttaggtccttcactaggatgcacgtaataaggaaaatcagtgt |
13139970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 265 - 375
Target Start/End: Complemental strand, 6340738 - 6340628
Alignment:
| Q |
265 |
tctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatcc |
364 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||| |||||||||||| |||||||||| || || ||||| || ||||| |||||||| ||| | |
|
|
| T |
6340738 |
tctatcaactttagaaaaacgctcttgaagctcaatccaaacatcaatggcgaattcatgaaaaacaattgtttgtgcaatttgcagagaaacagaattc |
6340639 |
T |
|
| Q |
365 |
agaatccaaga |
375 |
Q |
| |
|
| ||||||||| |
|
|
| T |
6340638 |
aaaatccaaga |
6340628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 745 - 813
Target Start/End: Complemental strand, 17117978 - 17117909
Alignment:
| Q |
745 |
aaagatgaa-aatcttgaagttcacgcatcaatggcagaagctaactgaatcgtaacaaactcttctcaa |
813 |
Q |
| |
|
||||||||| || ||||| | ||| ||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
17117978 |
aaagatgaagaagcttgaggatcatgcatcaatggcggaagctaactgaatcgtaacaaactcctctcaa |
17117909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 26628758 - 26628696
Alignment:
| Q |
444 |
aagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaacc |
506 |
Q |
| |
|
|||||| |||||||| |||||||| | || |||||||||| ||||||||||||||||||||| |
|
|
| T |
26628758 |
aagcttattcttggcacctaaagcacgttgcatagaacgactccatgcgaggtagttagaacc |
26628696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 26734734 - 26734672
Alignment:
| Q |
444 |
aagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaacc |
506 |
Q |
| |
|
|||||| |||||||| |||||||| | || |||||||||| ||||||||||||||||||||| |
|
|
| T |
26734734 |
aagcttattcttggcacctaaagcacgttgcatagaacgactccatgcgaggtagttagaacc |
26734672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 812
Target Start/End: Original strand, 13140166 - 13140209
Alignment:
| Q |
769 |
gcatcaatggcagaagctaactgaatcgtaacaaactcttctca |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
13140166 |
gcatcaatggcagaagctaactgaatcgtaagtaactcctctca |
13140209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 20071755 - 20071689
Alignment:
| Q |
183 |
tcaactcagtgaagtattcaagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaa |
249 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || |||||||||| || |||||| || |||||| |
|
|
| T |
20071755 |
tcaactcagtgaagtagtcaagcacaaaatttgtatcttgtttcaacttactgatagaagaacgtaa |
20071689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 17118820 - 17118711
Alignment:
| Q |
26 |
acaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacagggat |
125 |
Q |
| |
|
|||||| ||||| |||||||||| | ||| | ||| ||||||| || ||||||||| |||||| |||| |||| |||||||||||| ||||| || | |
|
|
| T |
17118820 |
acaacttcaaaagtatcattcaagcgagtcaaaaactgaatgacttcatcctccaaacaaaaattgcgagccgatctcatggattcacaacgacaagggt |
17118721 |
T |
|
| Q |
126 |
gaggacaagt |
135 |
Q |
| |
|
||| |||||| |
|
|
| T |
17118720 |
gagcacaagt |
17118711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 537 - 704
Target Start/End: Original strand, 5962 - 6130
Alignment:
| Q |
537 |
aggattttcacttggatgcacgtagtaaggtgaatcagtgttccgttgaaccacttgaggagcttgtcttggaggcatgatgaagacgaggcag-aaagt |
635 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
5962 |
aggattttcactcgaatgcacatagtaaggtgaatcagtgtttggttgaataacccgaggagcttgtcttggaggcatgatgaggacgaagcagaaaagt |
6061 |
T |
|
| Q |
636 |
agtaaaattgagaaaatagagtatgaagaaagacgaaggcgatgatacgtgaaacagtgaaacgaagaa |
704 |
Q |
| |
|
|||| ||||||||||| |||| | ||||||| |||||| |||||| |||||||| |||||| |||||| |
|
|
| T |
6062 |
agtagaattgagaaaacagaggaagaagaaaaacgaagtagatgatgcgtgaaacggtgaaaagaagaa |
6130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 720 - 817
Target Start/End: Original strand, 6197 - 6294
Alignment:
| Q |
720 |
ttcacgaaatcgagatgaattgagaaaagatgaaaatcttgaagttcacgcatcaatggcagaagctaactgaatcgtaacaaactcttctcaaggag |
817 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6197 |
ttcacgaaatcgagagaaattgagaaagcatgaaaagattgaagctcacacatcaatggcggaagctaactgaatcgtaacaaactcttctcaaggag |
6294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 145 - 378
Target Start/End: Complemental strand, 17128219 - 17127986
Alignment:
| Q |
145 |
cataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttgtttcaaattgttgatagcagta |
244 |
Q |
| |
|
|||||| ||||| |||| ||||| |||||||| || |||| || |||||||| ||||||||| || || |||||||| | ||||||||| | || | |
|
|
| T |
17128219 |
catagggcgatgtgaattgagctcctcccaaagagacttcatctatgtgaagtaatcaagcacagtcttagtaccttgtttaagattgttgattgtagaa |
17128120 |
T |
|
| Q |
245 |
cgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcga |
344 |
Q |
| |
|
|| | | || ||| | ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| || | |
|
|
| T |
17128119 |
cgaagagtagcaatacgaactctatcaaccttagagaagagttcttgaagctcaatccagacatcaatggcgtattcatgaaaaacaatggtttgcgcaa |
17128020 |
T |
|
| Q |
345 |
tttgaggagaaacaaaatccagaatccaagaatg |
378 |
Q |
| |
|
|||| | ||||||| | | ||||||||| ||||| |
|
|
| T |
17128019 |
tttgtgcagaaacatagttcagaatccaggaatg |
17127986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 35 - 378
Target Start/End: Original strand, 19805856 - 19806199
Alignment:
| Q |
35 |
aaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacagggatgaggacaag |
134 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | || || |||| ||||| | || ||| | |||| || ||||||||||| |||| ||||||| |
|
|
| T |
19805856 |
aaattatcattcaatctagtgagaaattgaatcacttaatcttccatgtgaaattctttagcagcacgcacagactcacagcgacatggatagggacaag |
19805955 |
T |
|
| Q |
135 |
ttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttgtttcaaattgtt |
234 |
Q |
| |
|
| ||| || |||||| ||||| |||| ||||| |||||||| ||||||| ||| |||||||| ||||| | | | || || ||||||| | |||||| |
|
|
| T |
19805956 |
tgcatgcaggcatagggcgatgtgaattgagctcctcccaaagagatttcatctctgtgaagtaatcaagaatagacttagtaccttgttaaagattgtt |
19806055 |
T |
|
| Q |
235 |
gatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatg |
334 |
Q |
| |
|
||| | || | | | | || ||| ||||| | |||||| ||||| | || ||||||||||||||| ||||||||||||||||||||||| || || |
|
|
| T |
19806056 |
gattgtagaatgaagagtagcaatatgaactctgtgaacctttgaaaaacatttttgaagctcaatccaaacatcaatggcgtattcatgaaaaacagtg |
19806155 |
T |
|
| Q |
335 |
gtttgagcgatttgaggagaaacaaaatccagaatccaagaatg |
378 |
Q |
| |
|
||||| || ||||| |||||||| | | || |||||||||||| |
|
|
| T |
19806156 |
gtttgcgcaatttgtggagaaactgagttcaaaatccaagaatg |
19806199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 101 - 376
Target Start/End: Complemental strand, 13129284 - 13129009
Alignment:
| Q |
101 |
cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttca-actcagtgaagtat |
199 |
Q |
| |
|
|||||||||||||| || || |||| ||||||||| || |||| ||| ||||||||| ||||||| || |||||||| ||||| | ||| |||||||| |
|
|
| T |
13129284 |
cgcatggattcacaacggcaaggataaggacaagtacacataggcatgggacgatgagaattaagttcctcccaaagagattttatactt-gtgaagtaa |
13129186 |
T |
|
| Q |
200 |
tcaagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaa |
299 |
Q |
| |
|
||||| ||| | || ||||||||||||||||| || | || ||||| ||||| || | | | ||||||||||||||| || ||||| | |||| |
|
|
| T |
13129185 |
tcaagaacagatttatcaccttgtttcaaattgttaatggaagaacgtagtgaagcaacacgaatacgatcaaccttagaaaaacgctcttgtaattcaa |
13129086 |
T |
|
| Q |
300 |
tccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaa |
376 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| || |||||||| ||||||||||||||| ||| | |||||||||| |
|
|
| T |
13129085 |
tccagacatcaatggcgtattcatggaatacaatagtttgagcaatttgaggagaaacagaattaataatccaagaa |
13129009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 265 - 375
Target Start/End: Complemental strand, 28015767 - 28015657
Alignment:
| Q |
265 |
tctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatcc |
364 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||| |||||||||||| |||||||||| || || ||||| || ||||| |||||||| ||| | |
|
|
| T |
28015767 |
tctatcaactttagaaaaacgctcttgaagctcaatccaaacatcaatggcgaattcatgaaaaacaattgtttgtgcaatttgcagagaaacagaattc |
28015668 |
T |
|
| Q |
365 |
agaatccaaga |
375 |
Q |
| |
|
| ||||||||| |
|
|
| T |
28015667 |
aaaatccaaga |
28015657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 265 - 375
Target Start/End: Original strand, 20485423 - 20485533
Alignment:
| Q |
265 |
tctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatcc |
364 |
Q |
| |
|
||||||||| |||||||| || | |||||||||||||| |||||||||||| |||||||||| || || ||||| || ||||| |||||||| ||| | |
|
|
| T |
20485423 |
tctatcaactttagaaaaacgcttctgaagctcaatccaaacatcaatggcgaattcatgaaaaacaattgtttgtgcaatttgcagagaaacagaattc |
20485522 |
T |
|
| Q |
365 |
agaatccaaga |
375 |
Q |
| |
|
| ||||||||| |
|
|
| T |
20485523 |
aaaatccaaga |
20485533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 101 - 357
Target Start/End: Complemental strand, 55308651 - 55308395
Alignment:
| Q |
101 |
cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtatt |
200 |
Q |
| |
|
|||||||||||||| || || |||| ||||||||| || |||| ||| ||||||||| ||||||| || ||||| || ||||| | ||| |||||||| | |
|
|
| T |
55308651 |
cgcatggattcacaacggcaaggataaggacaagtacacataggcatgggacgatgagaattaagttcctcccatagagatttgatctctgtgaagtaat |
55308552 |
T |
|
| Q |
201 |
caagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaat |
300 |
Q |
| |
|
|||| ||| | || |||||||||| |||||| || | || ||||| ||||| || | | | ||||||||||||||| || ||||| | ||||| |
|
|
| T |
55308551 |
caagaacagatttatcaccttgtttcagattgttaatggaagaacgtagtgaagcaacacgaatacgatcaaccttagaaaaacgctcttgcaattcaat |
55308452 |
T |
|
| Q |
301 |
ccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaac |
357 |
Q |
| |
|
||| |||||||||||| |||||||||| || || |||||||| |||||||||||||| |
|
|
| T |
55308451 |
ccaaacatcaatggcggattcatgaaagacaatagtttgagcaatttgaggagaaac |
55308395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 268 - 376
Target Start/End: Complemental strand, 8834575 - 8834467
Alignment:
| Q |
268 |
atcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccaga |
367 |
Q |
| |
|
||||||||||||||| || ||||| | |||||||| |||||||||||| |||||||||| || || |||||||| ||||||||||||||| ||| | | |
|
|
| T |
8834575 |
atcaaccttagaaaaacgctcttgcaattcaatccaaacatcaatggcggattcatgaaagacaatagtttgagcaatttgaggagaaacataattaata |
8834476 |
T |
|
| Q |
368 |
atccaagaa |
376 |
Q |
| |
|
||||||||| |
|
|
| T |
8834475 |
atccaagaa |
8834467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 101 - 376
Target Start/End: Complemental strand, 26470592 - 26470317
Alignment:
| Q |
101 |
cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtatt |
200 |
Q |
| |
|
|||||||||||||| || || |||| ||||||||| || |||| ||| ||||||||| ||||||| || ||||| || ||||| | ||| |||||||| | |
|
|
| T |
26470592 |
cgcatggattcacaacggcaaggataaggacaagtacacataggcatgggacgatgagaattaagttcctcccatagagatttgatctctgtgaagtaat |
26470493 |
T |
|
| Q |
201 |
caagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaat |
300 |
Q |
| |
|
|||| ||| | || |||||||||| |||||| || | || ||| | ||||| || | | | ||||||||||||||| || ||||| | ||||| |
|
|
| T |
26470492 |
caagaacagatttatcaccttgtttcagattgttaatggaagaacgcagtgaagcaacacgaatacgatcaaccttagaaaaacgctcttgcaattcaat |
26470393 |
T |
|
| Q |
301 |
ccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaa |
376 |
Q |
| |
|
||| |||||||||||| |||||||||| | || |||||||| ||||||||||||||| ||| | |||||||||| |
|
|
| T |
26470392 |
ccagacatcaatggcggattcatgaaagataatagtttgagcaatttgaggagaaacagaattaataatccaagaa |
26470317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 101 - 378
Target Start/End: Original strand, 16992425 - 16992702
Alignment:
| Q |
101 |
cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtatt |
200 |
Q |
| |
|
||||| |||||||| || || ||||| |||||||| || |||| |||||||||||| |||| ||||| |||||||| ||||||| ||| ||||| || | |
|
|
| T |
16992425 |
cgcatagattcacaacggcatggatgtggacaagtgcacataggcataggacgatgtgaattgagctcctcccaaagagatttcatctctgtgaaatagt |
16992524 |
T |
|
| Q |
201 |
caagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaat |
300 |
Q |
| |
|
|||| ||| | || | |||||||| | ||| ||||| | || || | |||| || | | ||||||||| |||||||| || || ||||||||||| |
|
|
| T |
16992525 |
caaggacagatttagcaccttgtttgagattattgatggaagagcgaagagaagcgatacgaattctatcaactttagaaaaacgctcctgaagctcaat |
16992624 |
T |
|
| Q |
301 |
ccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatg |
378 |
Q |
| |
|
||| |||||||||||| |||| ||||| || || ||||| || ||||| |||||||| | | || |||||||||||| |
|
|
| T |
16992625 |
ccaaacatcaatggcgaattcgtgaaaaacaattgtttgtgcaatttgcagagaaacagagttcaaaatccaagaatg |
16992702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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