View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7263_low_10 (Length: 240)

Name: NF7263_low_10
Description: NF7263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7263_low_10
NF7263_low_10
[»] chr1 (4 HSPs)
chr1 (1-223)||(10299750-10299972)
chr1 (131-210)||(47919832-47919911)
chr1 (128-210)||(47911018-47911100)
chr1 (20-52)||(14768800-14768832)
[»] chr3 (4 HSPs)
chr3 (122-213)||(40203594-40203685)
chr3 (122-213)||(40199431-40199522)
chr3 (122-213)||(40207750-40207841)
chr3 (140-209)||(44307285-44307354)
[»] chr8 (1 HSPs)
chr8 (20-53)||(17499130-17499163)
[»] chr5 (1 HSPs)
chr5 (121-218)||(42369771-42369868)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10299972 - 10299750
Alignment:
Q  1 tttaaaacatacagtaaaggttctcgtgagtttgactcagttggtagggacatacagtaaaaaggtgaaaacctctgatgtattctctcttctcttgtgt 100  Q
    |||||||||||||||||| ||||||||||||||   |||||||||| | ||||||||| |||| ||||||||| || | ||||||||| |||||||||||    
T  10299972 tttaaaacatacagtaaaagttctcgtgagtttagttcagttggtaagtacatacagtcaaaacgtgaaaaccactaacgtattctcttttctcttgtgt 10299873  T
Q  101 gtgacataaataggaaatgaatggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttg 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10299872 gtgacataaacaggaaatgaatggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttg 10299773  T
Q  201 gatggattgctggaccatcaatg 223  Q
    |||||||||||||||||||||||    
T  10299772 gatggattgctggaccatcaatg 10299750  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 47919911 - 47919832
Alignment:
Q  131 agtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgc 210  Q
    |||||||||||| | || |||||||| || ||||||||| |||| |||||||||||| |||||||| | || ||||||||    
T  47919911 agtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggctgttgcacaattgggctggattgc 47919832  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 47911100 - 47911018
Alignment:
Q  128 gcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgc 210  Q
    ||||||||||||||| | || ||||| || || ||||||||| |||| |||||||||||| |||||||| | || ||||||||    
T  47911100 gcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttggattgc 47911018  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 14768800 - 14768832
Alignment:
Q  20 gttctcgtgagtttgactcagttggtagggaca 52  Q
    ||||||||||| |||||||||||||||||||||    
T  14768800 gttctcgtgagcttgactcagttggtagggaca 14768832  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 40203594 - 40203685
Alignment:
Q  122 tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctgg 213  Q
    ||||| |||||||||||  |||| ||||||||||| || ||||||||||||||| | || ||||||||||| ||||||||||||||||||||    
T  40203594 tggactgcaagtgcacatgtaataacagctgtgatagggtctggagtgctgtctctagcttgggctattgctcaacttggatggattgctgg 40203685  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 40199431 - 40199522
Alignment:
Q  122 tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctgg 213  Q
    ||||| |||||||||||  |||| ||||||||| | || ||||||||||||||| |  | ||||||||||| ||||||||||||||||||||    
T  40199431 tggactgcaagtgcacatgtaataacagctgtggtagggtctggagtgctgtctctatcttgggctattgctcaacttggatggattgctgg 40199522  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 40207750 - 40207841
Alignment:
Q  122 tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctgg 213  Q
    ||||| |||||||||||  |||| ||||||||| | || |||||||| |||||| | || ||||||||||| ||||| ||||||||||||||    
T  40207750 tggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgctgg 40207841  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 44307354 - 44307285
Alignment:
Q  140 ataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattg 209  Q
    ||||| |||||||||||||| ||||| ||||| || || |||||||||| ||||||| | || |||||||    
T  44307354 ataataacagctgtgattgggtctggggtgctatccttagcatgggctactgcacaattgggttggattg 44307285  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 17499163 - 17499130
Alignment:
Q  20 gttctcgtgagtttgactcagttggtagggacat 53  Q
    ||||||||||||||||||||||||||||||||||    
T  17499163 gttctcgtgagtttgactcagttggtagggacat 17499130  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 42369771 - 42369868
Alignment:
Q  121 atggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctggaccat 218  Q
    ||||||||||   ||||||||| | ||||  ||||| || || |||||| | |||||| |||||   |||||||||||||||||||||| ||||||||    
T  42369771 atggacagcagtagcacacatagtgacaggggtgataggatcaggagtgttatctttgccatggagcattgcacaacttggatggattgttggaccat 42369868  T

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