View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7263_low_2 (Length: 525)

Name: NF7263_low_2
Description: NF7263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7263_low_2
NF7263_low_2
[»] chr2 (4 HSPs)
chr2 (1-515)||(16920787-16921301)
chr2 (192-248)||(7488774-7488830)
chr2 (195-267)||(44937798-44937870)
chr2 (294-338)||(27724244-27724288)
[»] chr6 (4 HSPs)
chr6 (57-398)||(286253-286594)
chr6 (317-492)||(2741665-2741837)
chr6 (351-396)||(29124307-29124352)
chr6 (351-396)||(32744734-32744779)
[»] chr4 (3 HSPs)
chr4 (222-397)||(48741856-48742031)
chr4 (321-403)||(42449933-42450015)
chr4 (316-397)||(44186226-44186307)
[»] chr3 (2 HSPs)
chr3 (219-334)||(2703740-2703855)
chr3 (193-248)||(5162445-5162500)
[»] chr5 (8 HSPs)
chr5 (195-393)||(42840388-42840586)
chr5 (219-332)||(9764519-9764632)
chr5 (336-403)||(42262530-42262597)
chr5 (316-397)||(15807590-15807671)
chr5 (341-388)||(16486625-16486672)
chr5 (194-393)||(28019143-28019342)
chr5 (201-248)||(40545118-40545165)
chr5 (195-248)||(42637370-42637423)
[»] chr1 (1 HSPs)
chr1 (194-248)||(368797-368851)


Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 16920787 - 16921301
Alignment:
Q  1 tggatggagtgtgtcattggtggagtatactaaatgacagtaattgttatgaggttgagccacgcttggtgtcatttgacttgtgtaatgaggtgtgtct 100  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16920787 tggatggagtgtgtcattggtggagtatactagatggcagtaattgttatgaggttgagccatgcttggtgtcatttgacttgtgtaatgaggtgtgtct 16920886  T
Q  101 tacaacaccgttgcccttagatatagttgagcgttattctcttttgcatttgacattgttaaatgggtctatcgctttcataatatatgatgaaacaact 200  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  16920887 tacaacaccgttgccctcagatatagttgaacgttattctcttttgcatttgacattgttaaatgggttcatcgctttcataatatatgatgaaacaact 16920986  T
Q  201 acttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgggttgaagtctttgttgttgagcccttacctggcattgaacgtccaatcggag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  16920987 acttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgggttgaagtctttgttgttgagccattacttggcattgaacgtccaatcggag 16921086  T
Q  301 cagggaagaatggtcatatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaaggaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16921087 cagggaagaatggtcatatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaaggaaa 16921186  T
Q  401 caagtattatggttgccagataataatttataaggatactcttctcccaattggaggtttatgactttggttagaagtattttaccttgtatttttattg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16921187 caagtattatggttgccagataataatttataaggatactcttctcccaattggaggtttatgactttggttagaagtattttaccttgtatttttattg 16921286  T
Q  501 ccttctgatgtccat 515  Q
    |||||| ||||||||    
T  16921287 ccttcttatgtccat 16921301  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 7488830 - 7488774
Alignment:
Q  192 gaaacaactacttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgg 248  Q
    |||| ||||||||||||||||  ||| ||||||||| |||||||||| |||||||||    
T  7488830 gaaataactacttttcacatatcaattttgggtgaaattggtgtgaaagaatcatgg 7488774  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 44937870 - 44937798
Alignment:
Q  195 acaactacttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgggttgaagtctttgttgttg 267  Q
    ||||||||||||||||||  ||| ||||||||||| || ||||| |||||||||  | || ||||||||||||    
T  44937870 acaactacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgttg 44937798  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 27724288 - 27724244
Alignment:
Q  294 atcggagcagggaagaatggtcatatattcttcagaaaagatgat 338  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||    
T  27724288 atcggagcagggaagaagggtgatatatttttgagaaaagatgat 27724244  T

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Target: chr6 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 57 - 398
Target Start/End: Complemental strand, 286594 - 286253
Alignment:
Q  57 gagccacgcttggtgtcatttgacttgtgtaatgaggtgtgtcttacaacaccgttgcccttagatatagttgagcgttattctcttttgcatttgacat 156  Q
    |||||||||||||||||||||||| | || ||||||||||  ||||||||||| ||||||| ||| || ||||| ||||||  | |||  ||||| ||||    
T  286594 gagccacgcttggtgtcatttgacctatgcaatgaggtgttccttacaacacctttgccctcagacatggttgaccgttatgatatttgtcatttaacat 286495  T
Q  157 tgttaaatgggtctatcgctttcataatatatgatgaaacaactacttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgggttgaagt 256  Q
    | ||||||||||| || | ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | || |    
T  286494 ttttaaatgggtcaattggtttcataatgtatgatgaaacaactacttttaacataagaatcttgggtgagcttggtgtgaaggaatcatgggataaaat 286395  T
Q  257 ctttgttgttgagcccttacctggcattgaacgtccaatcggagcagggaagaatggtcatatattcttcagaaaagatgataatgaaatagtctggttt 356  Q
    ||||   ||||||| |||||||   ||||| ||||| || |||| ||||||||| ||| ||||||||||||||||||||||| ||||| |||||| || |    
T  286394 ctttacagttgagctcttaccttatattgagcgtcctattggagtagggaagaaaggtgatatattcttcagaaaagatgatgatgaactagtctcgtct 286295  T
Q  357 gatttgaatacccaaatgattgaagagcttggtgttaaagga 398  Q
    ||||||| ||  ||||||||| ||||||||| || |||||||    
T  286294 gatttgagtatacaaatgattaaagagcttgatgctaaagga 286253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 492
Target Start/End: Complemental strand, 2741837 - 2741665
Alignment:
Q  317 tatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaaggaaacaagtattatggttgc 416  Q
    ||||||||||| |||| ||||| ||||| ||||||| |||||||||| ||| | ||||||||||||| ||||| ||||||||    |||| ||   ||||    
T  2741837 tatattcttcaaaaaacatgatcatgaactagtctgatttgatttgagtactcgaatgattgaagagattggtattaaaggatgtgagtaata---ttgc 2741741  T
Q  417 cagataataatttataaggatactcttctcccaattggaggtttatgactttggttagaagtattttaccttgtat 492  Q
    || || ||||||||||| ||   |||||||||||||| | |||||||| |||||||  ||| |||||| |||||||    
T  2741740 caaatcataatttataaagacggtcttctcccaattgaaagtttatgattttggtttaaaggattttatcttgtat 2741665  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 29124307 - 29124352
Alignment:
Q  351 tggtttgatttgaatacccaaatgattgaagagcttggtgttaaag 396  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  29124307 tggtttgatttgagtacccaaatgattgaggagcttggttttaaag 29124352  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 32744779 - 32744734
Alignment:
Q  351 tggtttgatttgaatacccaaatgattgaagagcttggtgttaaag 396  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  32744779 tggtttgatttgagtacccaaatgattgaggagcttggttttaaag 32744734  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 397
Target Start/End: Complemental strand, 48742031 - 48741856
Alignment:
Q  222 ggtgaacttggtgtgaaggaatcatgggttgaagtctttgttgttgagcccttacctggcattgaacgtccaatcggagcagggaag-aatggtcatata 320  Q
    |||||||| |||||||||||||| |||  | || ||||  || |||  ||||||||| ||||||||| ||| || |||| ||||||| |||||| || ||    
T  48742031 ggtgaactcggtgtgaaggaatcttggactaaactcttcatttttggacccttacctagcattgaacatcctattggag-agggaagtaatggtgattta 48741933  T
Q  321 ttcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaagg 397  Q
    ||||| |||| | |  || ||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  48741932 ttctttagaagaaaaaatgatgaactagtctggtttaatttgaatacccaaataattgaggagcttggtgttaaagg 48741856  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 42449933 - 42450015
Alignment:
Q  321 ttcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaaggaaacaa 403  Q
    |||||||| |||| |||||| ||| |||||||| ||||||| |  || |||||||||||  ||||||||||||||||| ||||    
T  42449933 ttcttcagcaaaggtgataaagaactagtctgggttgatttaaggactcaaatgattgagaagcttggtgttaaaggagacaa 42450015  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 397
Target Start/End: Original strand, 44186226 - 44186307
Alignment:
Q  316 atatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaagg 397  Q
    |||||||||| | |||| |||| ||||||||||  || |||||||| ||||| ||||  |||||||| || |||||||||||    
T  44186226 atatattctttataaaaaatgacaatgaaatagcttgttttgatttaaatactcaaacaattgaagatctgggtgttaaagg 44186307  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 2703740 - 2703855
Alignment:
Q  219 ttgggtgaacttggtgtgaaggaatcatgggttgaagtctttgttgttgagcccttacctggcattgaacgtccaatcggagcagggaagaatggtcata 318  Q
    ||||||||||||||||| |||||||||||| || || |||||| |||||| |||||  || |||||||  |||| || |||||| ||||||| ||  |||    
T  2703740 ttgggtgaacttggtgtcaaggaatcatggattaaactctttgatgttgaacccttgtcttgcattgatagtcctattggagcatggaagaagggcaata 2703839  T
Q  319 tattcttcagaaaaga 334  Q
    ||||||||||||||||    
T  2703840 tattcttcagaaaaga 2703855  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 5162445 - 5162500
Alignment:
Q  193 aaacaactacttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgg 248  Q
    |||||| || ||||||||||  ||| ||||||||| ||||||||||||||||||||    
T  5162445 aaacaaatatttttcacatatcaattttgggtgaagttggtgtgaaggaatcatgg 5162500  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 393
Target Start/End: Complemental strand, 42840586 - 42840388
Alignment:
Q  195 acaactacttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgggttgaagtctttgttgttgagcccttacctggcattgaacgtccaa 294  Q
    |||||||| ||||||||   ||| ||||||||||||||||| || |||||||||  | |||||||| ||||||  ||||||||| || ||||   |||||    
T  42840586 acaactacatttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttgccttgagtatccaa 42840487  T
Q  295 tcggagcagggaagaatggtcatatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgtta 393  Q
    | |||||||||||||| ||  |||||||  | | |||| | || |||||| |||  ||||||||||| | ||||  ||||||||||||  |||||||||    
T  42840486 ttggagcagggaagaagggcaatatattgattataaaaaaagacaatgaactagcttggtttgatttaagtaccggaatgattgaagaaattggtgtta 42840388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 9764519 - 9764632
Alignment:
Q  219 ttgggtgaacttggtgtgaaggaatcatgggttgaagtctttgttgttgagcccttacctggcattgaacgtccaatcggagcagggaagaatggtcata 318  Q
    ||||||||||||||||| |||||||||||| ||  | ||||   ||||||||||||  || ||||||| | ||| |||||||| |||||||||||  |||    
T  9764519 ttgggtgaacttggtgtcaaggaatcatggattagactcttctatgttgagcccttgtcttgcattgagcatcctatcggagctgggaagaatggaaata 9764618  T
Q  319 tattcttcagaaaa 332  Q
    ||||||||| ||||    
T  9764619 tattcttcataaaa 9764632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 42262530 - 42262597
Alignment:
Q  336 gataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaaggaaacaa 403  Q
    |||||| ||||||| ||| |||||||||| || || ||||||||||||||||||||| ||||| ||||    
T  42262530 gataataaaatagtttgggttgatttgaaaactcagatgattgaagagcttggtgttgaaggagacaa 42262597  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 316 - 397
Target Start/End: Complemental strand, 15807671 - 15807590
Alignment:
Q  316 atatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaagg 397  Q
    ||||||||||||||||| | ||||||||  |||| ||||||||||| |  ||||| |  || ||||||||||||||||||||    
T  15807671 atatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaagg 15807590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 388
Target Start/End: Complemental strand, 16486672 - 16486625
Alignment:
Q  341 tgaaatagtctggtttgatttgaatacccaaatgattgaagagcttgg 388  Q
    |||| |||| ||||||||||| |||||||||||||||||||| |||||    
T  16486672 tgaactagtttggtttgatttaaatacccaaatgattgaagatcttgg 16486625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 393
Target Start/End: Original strand, 28019143 - 28019342
Alignment:
Q  194 aacaactacttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgggttgaagtctttgttgttgagcccttacctggcattgaacgtcca 293  Q
    |||||||||  |||||||   |||||||||||||||| |||| ||||||||||||  | || |||| ||||| |  || |||||| || |||| | ||||    
T  28019143 aacaactacaattcacatttcaatcttgggtgaacttagtgtaaaggaatcatggactaaaatcttcgttgtaggaccattaccttgccttgagcatcca 28019242  T
Q  294 atcggagcagggaagaatggtcatatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgtta 393  Q
    |||||||| || ||||| ||| |||| || |||| |||  | ||    | | |||||||||| || || |||||||||||||| || || ||||||||||    
T  28019243 atcggagcgggaaagaagggtgatatgttgttcaaaaagaaagacggcggactagtctggttcgacttaaatacccaaatgatggaggaccttggtgtta 28019342  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 40545118 - 40545165
Alignment:
Q  201 acttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgg 248  Q
    ||||||||||||  ||| ||||||||| ||||||||||||||||||||    
T  40545118 acttttcacatatcaattttgggtgaagttggtgtgaaggaatcatgg 40545165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 42637423 - 42637370
Alignment:
Q  195 acaactacttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgg 248  Q
    ||||||||||||||||||  ||| ||||||||| | || |||||||||||||||    
T  42637423 acaactacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatgg 42637370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 368797 - 368851
Alignment:
Q  194 aacaactacttttcacataagaatcttgggtgaacttggtgtgaaggaatcatgg 248  Q
    |||||||||||||||||||  |||  | |||||| ||||||||||||||||||||    
T  368797 aacaactacttttcacatatcaattcttggtgaaattggtgtgaaggaatcatgg 368851  T

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