View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7263_low_8 (Length: 282)
Name: NF7263_low_8
Description: NF7263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7263_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 38243748 - 38244002
Alignment:
| Q |
11 |
acaatattcaactatacaaacatcattcatcatcaattccttcttctatnnnnnnnn-gtaacaaacaataaatgaaattaaagaagagaaatgagtttg |
109 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38243748 |
acaatattcaactataaaaacatcattcatcatcaatttcttcttctataaaaaaaaagtaacaaacaataaatgaaattaaagaagagaaatgagtttg |
38243847 |
T |
|
| Q |
110 |
atgataggaactgacgggtttttgatagaaatggaacaaggaaggaccaaggaactgtttacgcttggcgaaaacttcatcggcggatggtccataatac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38243848 |
atgataggaactgacgggtttttgatagaaatggaacaaggaaggaccaaggaactgtttacgcttggagaaaacttcatcggcggatggtccataatac |
38243947 |
T |
|
| Q |
210 |
ggatgaggttggtgatcgaaaggcggtatctgcggcggtggcgtagtaatggttt |
264 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38243948 |
ggatgaggttggtgatcgaacggcggtatctgcggcggtggcgtagtaatggttt |
38244002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University