View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7264_high_2 (Length: 438)

Name: NF7264_high_2
Description: NF7264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7264_high_2
NF7264_high_2
[»] chr4 (12 HSPs)
chr4 (1-424)||(38145593-38146016)
chr4 (109-360)||(38149509-38149760)
chr4 (118-196)||(36108009-36108087)
chr4 (118-196)||(21482741-21482819)
chr4 (119-207)||(38086358-38086446)
chr4 (136-207)||(36080163-36080234)
chr4 (137-206)||(37954200-37954269)
chr4 (119-207)||(38072848-38072936)
chr4 (119-194)||(38058520-38058595)
chr4 (119-194)||(38061859-38061934)
chr4 (130-196)||(34971558-34971624)
chr4 (154-196)||(36100786-36100828)
[»] chr2 (3 HSPs)
chr2 (16-424)||(11786804-11787212)
chr2 (154-194)||(11803584-11803624)
chr2 (139-191)||(11917650-11917702)
[»] chr6 (1 HSPs)
chr6 (118-196)||(6838770-6838848)


Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 38145593 - 38146016
Alignment:
Q  1 taccctgcatgcctgtgcacaagcttagttgttggtggacacatatcaggaggtgcatatggaacattgattagaaaatatgttcttgtcgttgataatg 100  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||  ||||||||||    
T  38145593 taccctgcaggcctgtgcacaagcttaggtgttggtggacacataacaggaggtgcatatggaacattgatgagaaaatatggtcttggtgttgataatg 38145692  T
Q  101 tcttagatgctcgaatcgttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145693 tcttagatgctcgaatcgttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaag 38145792  T
Q  201 ctttggtatacttctttggtggaagataaagcttgttcctgttccaccaacagtgacagtttttactgtcactaaaactctagaacaaggtgctacaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145793 ctttggtatacttctttggtggaagataaagcttgttcctgttccaccaacagtgacagtttttactgtcactaaaactctagaacaaggtgctacaaaa 38145892  T
Q  301 attcttcatagatggcaagaagtagcaccttttattgatgaaaatctcttcattagagtcatcatccaaccagctgctagtgttggaaacaaaactcaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145893 attcttcatagatggcaagaagtagcaccttttattgatgaaaatctcttcattagagtcatcatccaaccagctgctagtgttggaaacaaaactcaaa 38145992  T
Q  401 gaactattacaaattcttataatg 424  Q
    ||||||||||||||||||||||||    
T  38145993 gaactattacaaattcttataatg 38146016  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 360
Target Start/End: Original strand, 38149509 - 38149760
Alignment:
Q  109 gctcgaatcgttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttggta 208  Q
    |||||||| |||||||| || || || ||||||||||| ||||| |||||||| || ||||||||||| |||||||| || ||||| || ||||| ||      
T  38149509 gctcgaattgttgatgctaatggaaaaattcttgacaggaaagcaatgggagaagacctattttgggcaataagaggaggcggaggaggtagcttcggag 38149608  T
Q  209 tacttctttggtggaagataaagcttgttcctgttccaccaacagtgacagtttttactgtcactaaaactctagaacaaggtgctacaaaaattcttca 308  Q
    |  |||| ||||||||||| ||  | |||||||| |||  ||| ||||||||||| || || || || | ||||||||||||||  |  ||| ||||| |    
T  38149609 ttattctctggtggaagatcaaattagttcctgtgccaaaaactgtgacagttttcacagtaacaaagagtctagaacaaggtggaaacaaacttcttta 38149708  T
Q  309 tagatggcaagaagtagcaccttttattgatgaaaatctcttcattagagtc 360  Q
    |||||||||| ||||||||||   ||||||||||||||||||||| ||||||    
T  38149709 tagatggcaacaagtagcaccaaatattgatgaaaatctcttcatcagagtc 38149760  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 36108009 - 36108087
Alignment:
Q  118 gttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtg 196  Q
    |||||||  |||||||| |||||||| |||||| | |||||||| ||||| ||||||||||||||||||||||| ||||    
T  36108009 gttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtg 36108087  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 21482741 - 21482819
Alignment:
Q  118 gttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtg 196  Q
    ||||||| ||| ||||| || ||||| |||||| | |||||||| ||||| ||||||||||||||||||||||| ||||    
T  21482741 gttgatgtgaatggtaatatccttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtg 21482819  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 38086358 - 38086446
Alignment:
Q  119 ttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttggt 207  Q
    |||||| ||||||||   ||||||||||| |||| ||||| |||||| | ||||||||||| |||||||||||||| | ||| ||||||    
T  38086358 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggt 38086446  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 36080163 - 36080234
Alignment:
Q  136 attcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttggt 207  Q
    |||||||| |||||| | |||||||| ||| |||||||||||||||| |||||||| |||| ||| ||||||    
T  36080163 attcttgatagaaaatcaatgggagaagatttattttgggctataaggggtggtggtggtgcaagttttggt 36080234  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 37954200 - 37954269
Alignment:
Q  137 ttcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttgg 206  Q
    ||||||||||| || | ||||| |||||||| ||||||||||| ||||| |||||||| | |||||||||    
T  37954200 ttcttgacagagaatcgatgggtgaggatctgttttgggctattagaggaggtggaggagcaagctttgg 37954269  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 38072848 - 38072936
Alignment:
Q  119 ttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttggt 207  Q
    |||||| ||||||||   ||||||||||| |||| ||||| || ||| | ||||||||||| |||||||||||||| | ||| ||||||    
T  38072848 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggt 38072936  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 38058520 - 38058595
Alignment:
Q  119 ttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggagg 194  Q
    |||||| ||||||||   ||||||||||| |||| ||||| || ||| | ||||||||||| ||||||||||||||    
T  38058520 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggagg 38058595  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 38061934 - 38061859
Alignment:
Q  119 ttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggagg 194  Q
    |||||| ||||||||   ||||||||||| |||| ||||| |||||| | ||||||||||| ||||| ||||||||    
T  38061934 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaggattttttttgggctattagaggaggtggagg 38061859  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 34971624 - 34971558
Alignment:
Q  130 ggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtg 196  Q
    ||||| |||||||| |||||  | |||||||| ||||| ||||||||||| ||||||||||| ||||    
T  34971624 ggtaatattcttgatagaaagtcaatgggagaagatctcttttgggctatcagaggtggtggtggtg 34971558  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 36100786 - 36100828
Alignment:
Q  154 atgggagaggatctattttgggctataagaggtggtggaggtg 196  Q
    |||||||| |||||||||||||||||||| |||||||| ||||    
T  36100786 atgggagaagatctattttgggctataaggggtggtggtggtg 36100828  T

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Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 11787212 - 11786804
Alignment:
Q  16 tgcacaagcttagttgttggtggacacatatcaggaggtgcatatggaacattgattagaaaatatgttcttgtcgttgataatgtcttagatgctcgaa 115  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||||| |  |||| ||||| |||| |||||  | |||||||||  | || ||   ||    
T  11787212 tgcacaagtttaggtgttggtggacacataacaggaggtgcatatggatccatgatgagaaagtatggtcttggagctgataatgttctcgacgcaaaaa 11787113  T
Q  116 tcgttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttggtatacttct 215  Q
    | || |||||||| || || ||||| || |||||| | ||||| |||||  | ||||||||||| |||||||||||||||||||| |||||||| |||||    
T  11787112 tagtcgatgcgaacggaaatattctcgatagaaaatctatgggggaggaattcttttgggctattagaggtggtggaggtggaagttttggtattcttct 11787013  T
Q  216 ttggtggaagataaagcttgttcctgttccaccaacagtgacagtttttactgtcactaaaactctagaacaaggtgctacaaaaattcttcatagatgg 315  Q
    ||||||||||||||| |||||||||||||||  ||| ||||| |||||||| || || ||||   ||||||||| ||| |  || ||| |||||| ||||    
T  11787012 ttggtggaagataaaacttgttcctgttccaaaaaccgtgacggtttttaccgttaccaaaagcttagaacaagatgcaagtaagattgttcataaatgg 11786913  T
Q  316 caagaagtagcaccttttattgatgaaaatctcttcattagagtcatcatccaaccagctgctagtgttggaaacaaaactcaaagaactattacaaatt 415  Q
    ||||||||||||||   |||||||||||||||||| || ||||| ||||| |||||||||||||||  || |||||||||||||||||||||||| | ||    
T  11786912 caagaagtagcaccaactattgatgaaaatctctttatgagagttatcattcaaccagctgctagtactgcaaacaaaactcaaagaactattactactt 11786813  T
Q  416 cttataatg 424  Q
    |||| ||||    
T  11786812 cttacaatg 11786804  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 11803624 - 11803584
Alignment:
Q  154 atgggagaggatctattttgggctataagaggtggtggagg 194  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  11803624 atgggtgaggatctattttgggctataagaggaggtggagg 11803584  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 11917650 - 11917702
Alignment:
Q  139 cttgacagaaaagccatgggagaggatctattttgggctataagaggtggtgg 191  Q
    ||||| |||||| | |||||||| ||||| |||||||||||||||||||||||    
T  11917650 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtgg 11917702  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 6838770 - 6838848
Alignment:
Q  118 gttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtg 196  Q
    |||||||  |||||||| |||||||| |||||| | |||||||| ||||| |||||||| |||||||||||||| ||||    
T  6838770 gttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggccataagaggtggtggtggtg 6838848  T

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