View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7264_high_6 (Length: 320)
Name: NF7264_high_6
Description: NF7264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7264_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 8686847 - 8686585
Alignment:
| Q |
16 |
ttagacacttcgtatctggcacaattccttcttcgtcaacttcaaacgtaacacattcttcaatagtgtcccatagctcatcatcaatgcctatgatgtg |
115 |
Q |
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| T |
8686847 |
ttagacacttcgtatctggcacaattccatcttcgtcaacttcaaacgtaacaccttcttcaatagtgtcccatagctcatcatcaatgcctat-atgtg |
8686749 |
T |
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| Q |
116 |
gtagtacatcttgtttttccactaggaaaattgagcagcatctccattaaaggatgcaggtcttgcagaaaagcagttattatcagaggttgaagtgcag |
215 |
Q |
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| T |
8686748 |
gcagtacatcttgtttttccactagaaaaattgagcagcatctccattaaaggatgcaggtcttgcagaaaagcagttattatcggaggttgaagtgcag |
8686649 |
T |
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| Q |
216 |
ggctaagaggtgttgttggatgttttagaggctgaagtatccctctcaggagtagacatgtttt |
279 |
Q |
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| T |
8686648 |
ggctaagaggtgttgttggatgttttagaggctgaagtatccttctcaggagtagacatgtttt |
8686585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 11449968 - 11449928
Alignment:
| Q |
266 |
agtagacatgtttttctctctggatctttaattgtggcaca |
306 |
Q |
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| T |
11449968 |
agtagacatgtttttctctttggatctttaattgtggcaca |
11449928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 4448200 - 4448291
Alignment:
| Q |
72 |
tcttcaatagtgtcccatagctcatcatcaatgcctatgatgtggtagtacatcttgtttttccactaggaaaattgagcagcatctccatt |
163 |
Q |
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| T |
4448200 |
tcttcaatgatgtcccataaatcatcatcaactcctatgatgagattgtacatcttgtttttccaccttgagaaatgagtagcatctccatt |
4448291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 13362647 - 13362686
Alignment:
| Q |
266 |
agtagacatgtttttctctctggatctttaattgtggcac |
305 |
Q |
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| T |
13362647 |
agtagacatgtttttctctatgaatctttaattgtggcac |
13362686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 26010714 - 26010810
Alignment:
| Q |
82 |
tgtcccatagctcatcatcaatgcctatgatgtggtagtacatcttgtttttccactaggaaaattgagcagcatctccattaaaggatgcaggtct |
178 |
Q |
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| T |
26010714 |
tgtcccacaactcatcatcaataccaatgacatgattgtacattttactcttccactaggaaaactgagcaacatatccattgaaggatggaggtct |
26010810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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