View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7264_high_9 (Length: 242)
Name: NF7264_high_9
Description: NF7264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7264_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 39300414 - 39300192
Alignment:
| Q |
20 |
gagccttcaaagaagacaacaactaagcttgtctatcaattctttgaggacgaacgtccacatgaacgcatgcatctgattaataaggcaagttcttttc |
119 |
Q |
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| T |
39300414 |
gagccttcaaagaagacaacaactaagcttgtctatcaattctttgaggacgaacgtccacatgaacgcatgcatctgattaataaggcaagttcttttc |
39300315 |
T |
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| Q |
120 |
attttcagatatacctcttcacattatattccatttttctagtttaaacgctaaaaatttctctcatctctcaggtttcaattcttgctgaggagcgtcc |
219 |
Q |
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| T |
39300314 |
attttcagatatacctcttcacattatattccatttttctagtttaaacgctaaatatttctctcatctctcaggtttcaattcttgctgaggagcgtcc |
39300215 |
T |
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| Q |
220 |
ttatataaaaacctacaggagct |
242 |
Q |
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| T |
39300214 |
ttatataaaaacctacaggagct |
39300192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 242
Target Start/End: Complemental strand, 39308180 - 39308026
Alignment:
| Q |
85 |
acgcatgcatctgattaataaggcaagttcttttcattttcagatatacctcttcacattatattccatttttctagtttaaacgctaaaaatttc-tct |
183 |
Q |
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|||||||| ||| |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||| | | |
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| T |
39308180 |
acgcatgcctctaattaataaggtaagtctttttctttttcagatatacctcttcacattatattccattttt----tataacccctaaaaatttctttt |
39308085 |
T |
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| Q |
184 |
catctctcaggtttcaattcttgctgaggagcgtccttatataaaaacctacaggagct |
242 |
Q |
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| T |
39308084 |
tttctctcaggtttcagatcttgctaaggagcatcctggtataaaaaactataggagct |
39308026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 26556069 - 26555942
Alignment:
| Q |
93 |
atctgattaataaggcaagttcttttcattttcagatatacctcttcacattatattccatttttctagtttaaacgctaaaaatttctctcatctctca |
192 |
Q |
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|||| ||||||||||||||| |||||| |||||| || ||| |||||||||||||||||||||||||||||||||||| ||||| | | | ||||||| |
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| T |
26556069 |
atctaattaataaggcaagtccttttctttttcatatctacttcttcacattatattccatttttctagtttaaacgccaaaaaatctttttttctctca |
26555970 |
T |
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| Q |
193 |
ggtttcaattcttgctgaggagcgtcct |
220 |
Q |
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| T |
26555969 |
ggtttcagatcttgctaaggagcatcct |
26555942 |
T |
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