View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7264_low_1 (Length: 463)
Name: NF7264_low_1
Description: NF7264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7264_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 56167502 - 56167056
Alignment:
| Q |
1 |
caaacgtatcataagcatcagcagcctcctccttacgccgctgagcatcagcttcctcgggcttctcctcgacaccatccttcttcctaatctgatccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56167502 |
caaacgtatcataagcatcagcagcctcctccttacgccgctgagcatcagcttcctcgggcttctcctcgacaccatccttcttcctaatctgatccct |
56167403 |
T |
|
| Q |
101 |
catctctttctcgtgctttgccgcaagcttcttctgctcacggcgatccattccagctctaaaccctcggccaaaaagaagctgagcttcatgagggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56167402 |
catctctttctcgtgctttgccgcaagcttcttctgctcacggcgatccattccagctctaaaccctcggccaaaaagaagctgagcttcatgagggttt |
56167303 |
T |
|
| Q |
201 |
tgataaagaacattcatatcacgagaagtatcttcagtattttcccaatcaaaagaaaatcgaaatttctcactaggtttaataacccnnnnnnnnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56167302 |
tgataaagaacattcatatcacgcgaagtatcttcagtattttcccaatcaaaagaaaatcgaaatttctcactaggtttaataaccctttttttaggtt |
56167203 |
T |
|
| Q |
301 |
nnnnngaacctaggtattgttccttaatcgaatcaagctccttttcacgttctcgttccgctagcttctccaatcgagctcgctcacgaactttattctc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56167202 |
tttttgaacctaggtattgttccttaatcgaatcaagctccttttcacgttctcgttccgctagcttctccaatcgagctcgctcacgaactttattctc |
56167103 |
T |
|
| Q |
401 |
ttcttcacgttctctatcgcggtgtcttcgttcacgatctctgttat |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56167102 |
ttcttcacgttctctatcgcggtgtcttcgttcacgatctctgttat |
56167056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 6029641 - 6029597
Alignment:
| Q |
242 |
ttcccaatcaaaagaaaatcgaaatttctcactaggtttaataac |
286 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||||||||||||| |
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|
| T |
6029641 |
ttcccattcgaaagtaaatcgaaatttctcactaggtttaataac |
6029597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 6034495 - 6034440
Alignment:
| Q |
231 |
tcttcagtattttcccaatcaaaagaaaatcgaaatttctcactaggtttaataac |
286 |
Q |
| |
|
|||||||| ||||||||||| || | ||||||||||||||| ||||||||| |||| |
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|
| T |
6034495 |
tcttcagtgttttcccaatcgaacgtaaatcgaaatttctcgctaggtttagtaac |
6034440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 447
Target Start/End: Original strand, 708209 - 708648
Alignment:
| Q |
8 |
atcataagcatcagcagcctcctccttacgccgctgagcatcagcttcctcgggcttctcctcgacaccatccttcttcctaatctgatccctcatctct |
107 |
Q |
| |
|
|||||||||||||||||||||||| || |||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
708209 |
atcataagcatcagcagcctcctctttccgcctttgagcatcagcctcctcaggcttctcctccacaccatccttcttcctaatctgatccctcatctct |
708308 |
T |
|
| Q |
108 |
ttctcgtgctttgccgcaagcttcttctgctcacggcgatccattccagctctaaaccctcggccaaaaagaagctgagcttcatgagggttttgataaa |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
708309 |
ttctcctgctttgccgcaagcttcttctgttcacgacgatccattccagcgataaaccctcggccaaaaagaagctgagccgtatgagggttttcataaa |
708408 |
T |
|
| Q |
208 |
gaacattcatatcacgagaagtatcttcagtattttcccaatcaaaagaaaatcgaaatttctcactaggtttaataacccnnnnnnnnnnnnnnnnnga |
307 |
Q |
| |
|
|| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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|
| T |
708409 |
gatcattcctatcacgtgaagtatcttcagtattttcccaatcaaatgaaaatcgaaatttctcactaggtttaataaccctttttttaggtttttttga |
708508 |
T |
|
| Q |
308 |
acctaggtattgttccttaatcgaatcaagctccttttcacgttctcgttccgctagcttctccaatcgagctcgctcacgaactttattctcttcttca |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||| ||||||| | |||||| |||||| |||||||||| |
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|
| T |
708509 |
acctaggtattgttccttaatcgattcaagatcctgctcacgttttcgttccgctagcttctccgatcgagcatgttcacgagctttatcctcttcttca |
708608 |
T |
|
| Q |
408 |
cgttctctatcgcggtgtcttcgttcacgatctctgttat |
447 |
Q |
| |
|
|| ||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
708609 |
cgctctctatcgcggtttcttcgttcccgatctctgttat |
708648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 396 - 447
Target Start/End: Original strand, 2523132 - 2523183
Alignment:
| Q |
396 |
ttctcttcttcacgttctctatcgcggtgtcttcgttcacgatctctgttat |
447 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
2523132 |
ttctcttcttcacgttctctatcgcggtttcttcgttcacgatctcggttat |
2523183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 447
Target Start/End: Original strand, 12355670 - 12355721
Alignment:
| Q |
396 |
ttctcttcttcacgttctctatcgcggtgtcttcgttcacgatctctgttat |
447 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
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|
| T |
12355670 |
ttctcttcttcacgttctctatcgcggtttcttcattcacgatctcggttat |
12355721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 396 - 447
Target Start/End: Complemental strand, 28323094 - 28323043
Alignment:
| Q |
396 |
ttctcttcttcacgttctctatcgcggtgtcttcgttcacgatctctgttat |
447 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
28323094 |
ttctcttcttcacgttctctatcgcggtttcttcgttcacgatctcggttat |
28323043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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