View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7264_low_3 (Length: 403)
Name: NF7264_low_3
Description: NF7264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7264_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 385
Target Start/End: Complemental strand, 38145410 - 38145046
Alignment:
| Q |
21 |
cacttcttactcttagatggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcgg |
120 |
Q |
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| T |
38145410 |
cacttcttactcttagatggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcgg |
38145311 |
T |
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| Q |
121 |
tgtagatggtgccaaacaccttaggttcattgctaaggaatcaaggatggttgcgaatgaaggttcatttggagtgtaaattgttgtatgaaatggatat |
220 |
Q |
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| T |
38145310 |
tgtagatggtgccaaacaccttaggttcattgctaaggaatcaaggatggttgcgaatgaaggttcatttggagtgtaaattgttgtatgaaatggatat |
38145211 |
T |
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| Q |
221 |
gttctgtctgaattcatgttgagacattggacaaaactgtcttgaagtaataaagaggaaacttttaatgaaagtgatgataatagaaggactaaaattg |
320 |
Q |
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| T |
38145210 |
gttctgtctgaattcatgttgagacattggacaaaactgtcttgaagtaataaagaggaaacttttaatgaaagtgatgataatagaaggactaaaattg |
38145111 |
T |
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| Q |
321 |
gcaagggtaagattggtgaatccatgatttttgtttgtgttctcgtttttgtggtgaaggaaggt |
385 |
Q |
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| T |
38145110 |
gcaagggtaagattggtgaatccatgatttttgtttgtgttctcgtttttgtggtgaaggaaggt |
38145046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 11787410 - 11787533
Alignment:
| Q |
21 |
cacttcttactcttagatggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcgg |
120 |
Q |
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| T |
11787410 |
cacttcttactcttagatgaataccaagtttctttgaacaagtaacagctacttggacatgtgaatcggttaagggtgtgaatatgaattcgggttttgg |
11787509 |
T |
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| Q |
121 |
tgtagatggtgccaaacaccttag |
144 |
Q |
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| T |
11787510 |
agcagaaggtaccaaataccttag |
11787533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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