View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7264_low_4 (Length: 380)
Name: NF7264_low_4
Description: NF7264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7264_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 32769671 - 32770031
Alignment:
| Q |
16 |
cagatgaggaaaaagtgttacatgaaatcatagatgcgagttgtaaatggggaatgttccaaattgttaaccatgaaatacctacagaacttataaccaa |
115 |
Q |
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| T |
32769671 |
cagatgaggaaaaagtgttacatgaaatcatagatgcgagttgtaaatggggaatgttccaaattgttaatcatgaaatacctacagaacttataaccaa |
32769770 |
T |
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| Q |
116 |
acttcaaagtgttggaaaaacgttttttgagttacctcaagaagaaaaggagcaatatgctaaacctcctgattctaaatctattgaaggttatggatct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32769771 |
acttcaaagtgttggaaaaacgttttttgagttacctcaagaagaaaaggagcaatatgctaaacctcctgattctaaatctattgaaggttatggatct |
32769870 |
T |
|
| Q |
216 |
aagcttggtaatgatattgataacaagagaggttgggttgatcatttgtttcataagatatggccaccttcggatattaactatcgattttggcctaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32769871 |
aagcttggtaatgatattgataacaagagaggttgggttgatcatttgtttcataagatatggccaccttcggatattaactatcgattttggcctaaaa |
32769970 |
T |
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| Q |
316 |
atcctccttcttacaggttagttatttatgtatgcgtcttattacaagcttctataattct |
376 |
Q |
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| T |
32769971 |
atcctccttcttacaggttacttatttatgcatgcctcttattacaagcttctataattct |
32770031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 24404502 - 24404621
Alignment:
| Q |
63 |
tggggaatgttccaaattgttaaccatgaaatacctacagaacttataaccaaacttcaaagtgttggaaaaacgttttttgagttacctcaagaagaaa |
162 |
Q |
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| T |
24404502 |
tggggaatgtttcaaattgtgaaccatgaaattccaaatgaagttataagaaagttgcaaagtgttggtaaagagttttttgagttaccacaagatgaaa |
24404601 |
T |
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| Q |
163 |
aggagcaatatgctaaacct |
182 |
Q |
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| T |
24404602 |
aagaggtttatgctaaacct |
24404621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 24398879 - 24398972
Alignment:
| Q |
240 |
aagagaggttgggttgatcatttgtttcataagatatggccaccttcggatattaactatcgattttggcctaaaaatcctccttcttacaggt |
333 |
Q |
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|||| ||||||||| |||||||||||||||| |||||||||||||| ||||| || || ||||||||||| || ||| |||| ||||||| |
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| T |
24398879 |
aagaaaggttgggtagatcatttgtttcatattatatggccaccttcttccattaattaccgtttttggcctaacaaccctgcttcgtacaggt |
24398972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 24398699 - 24398799
Alignment:
| Q |
60 |
aaatggggaatgttccaaattgttaaccatgaaatacctacagaacttataaccaaacttcaaagtgttggaaaaacgttttttgagttacctcaagaag |
159 |
Q |
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|||||||||||||| |||||||| |||||||| || || | ||| |||||| ||| | ||||||||||| ||| || ||||||||||| ||||||| |
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| T |
24398699 |
aaatggggaatgtttcaaattgtgaaccatgatattccaaatgaagttataaaaaaattgcaaagtgttggtaaagaattctttgagttaccacaagaag |
24398798 |
T |
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| Q |
160 |
a |
160 |
Q |
| |
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| T |
24398799 |
a |
24398799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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