View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7264_low_5 (Length: 346)
Name: NF7264_low_5
Description: NF7264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7264_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 40060644 - 40060926
Alignment:
| Q |
16 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacctgaaatgttcttcaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40060644 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattactatatggtattgcaacctgaaatgttcttcaca |
40060743 |
T |
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| Q |
116 |
agttcaatttactatatggtattgttcttaaggccagtttttaagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40060744 |
agttcaatttactatatggtattgttcttaaggccagtttttaagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatg |
40060843 |
T |
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| Q |
216 |
gaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40060844 |
gaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggt |
40060926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 40078766 - 40079052
Alignment:
| Q |
16 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacctgaaatgttcttcaca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||| || |
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| T |
40078766 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgtggtggaacatttcaaaactactatatggtattgcaacctgaaatgttgttcgca |
40078865 |
T |
|
| Q |
116 |
agttcaatttactatatggtattgtt-cttaaggccagtttt-----taagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagt |
209 |
Q |
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| T |
40078866 |
agttcaattt--tatatgatagtattacttcacggaaaaattggctctaagaggaattagctaatactttatcattttttattgcttgcccaaaaacagt |
40078963 |
T |
|
| Q |
210 |
accatggaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||| |
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| T |
40078964 |
accatggaggaaccaactttgaccgaagtaccggcggacctttcattgctacaagttatgattatgatgcaccgattgatgagtatggt |
40079052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 157 - 298
Target Start/End: Original strand, 40086684 - 40086825
Alignment:
| Q |
157 |
taagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatggaggaaccaactttgaccgaagtaccggcggaccattcatt |
256 |
Q |
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| T |
40086684 |
taagaggaattagctgatactgtatcatttttcattgcttgactaaaaacagtaccatggaggaaccaactttgaccgaagtactggaggaccattcatt |
40086783 |
T |
|
| Q |
257 |
gctacaagttacgattttgatgcaccgattgatgaatatggt |
298 |
Q |
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| T |
40086784 |
gcaacaagttatgattttgatgcaccgattgatgagtatggt |
40086825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 40086539 - 40086644
Alignment:
| Q |
16 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacctgaaatgttcttcaca |
115 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40086539 |
acctgtggaagatctcgcatttgctgtcgcacgctttttccaacgaggtggaacatttcaaaattactatatggtattgcaacctgaaatgttcttcaca |
40086638 |
T |
|
| Q |
116 |
agttca |
121 |
Q |
| |
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|||||| |
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| T |
40086639 |
agttca |
40086644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 35257855 - 35257931
Alignment:
| Q |
16 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtat |
92 |
Q |
| |
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|||||| ||||| |||||||||||||| || || |||||||| || || |||| ||||||||||||||||||||| |
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| T |
35257855 |
acctgttgaagaccttgcatttgctgttgcgcgttttttccagcgtggaggaagtcttcaaaattattatatggtat |
35257931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 298
Target Start/End: Complemental strand, 22014530 - 22014423
Alignment:
| Q |
191 |
ttgcctgctcaaaaacagtaccatggaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatg |
290 |
Q |
| |
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|||| ||||| |||| ||||||||||||| || ||||||| |||| || || ||||| |||||| | || ||||| |||| ||||||||| ||||||| |
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| T |
22014530 |
ttgcttgctctaaaatagtaccatggagggactaactttggtcgaacaacgggtggacctttcatttcaacgagttatgattatgatgcacccattgatg |
22014431 |
T |
|
| Q |
291 |
aatatggt |
298 |
Q |
| |
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| |||||| |
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| T |
22014430 |
agtatggt |
22014423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 22014836 - 22014765
Alignment:
| Q |
20 |
gtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggta |
91 |
Q |
| |
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|||||||||||||| ||||| || || |||||||| || || |||||||| ||||||||||| || |||||| |
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| T |
22014836 |
gtggaagatcttgcttttgccgttgcgcgcttttttcagcggggtggaacttttcaaaattactacatggta |
22014765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 52548999 - 52548939
Alignment:
| Q |
207 |
agtaccatggaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagtta |
267 |
Q |
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|||| ||||||||||| |||||||| |||| | | || ||||| ||||||||||||||||| |
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| T |
52548999 |
agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagtta |
52548939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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