View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7264_low_6 (Length: 336)
Name: NF7264_low_6
Description: NF7264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7264_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 10910016 - 10910331
Alignment:
| Q |
20 |
aaaccagcactgtctgtcacaaaccttttctcctgcactaatagataatttttcacacttaagcaaaaattgctcnnnnnnnnnnnnnncaaagtcccca |
119 |
Q |
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| T |
10910016 |
aaaccagcactgtctgtcacaaaccttttctcctgcactaatagataatttttcacacttaagcaaaaattgctcaaaaaaataaaaaacaaagtcccca |
10910115 |
T |
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| Q |
120 |
tagttcaagttcttatttttcttgatctagttttgagccttaatttgttgtctggtttttcttactttaattaacaggaatattttcttactagtgtttt |
219 |
Q |
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| T |
10910116 |
tagttcaagttcttatttttcttgatctagttttgagccttaatttgttgtctggtttttcttactttaattaacaggaatattttcttgctagtgtttt |
10910215 |
T |
|
| Q |
220 |
gagaccttttctcatgcactaacatcatgctttagtaaacaagaatatatacttcaaaatc---------aagcttgcaggtggttttgttttgaattca |
310 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
10910216 |
gagaccttttctcatgcactaatatcatgctttagtaaacaagaatatatacttcaaaatcatgcttgctatgcttgcaggtggttttgttttgaattca |
10910315 |
T |
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| Q |
311 |
atttgtttcacaggtt |
326 |
Q |
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||||||||||| |||| |
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| T |
10910316 |
atttgtttcacgggtt |
10910331 |
T |
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