View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7265_low_1 (Length: 349)
Name: NF7265_low_1
Description: NF7265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7265_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 333
Target Start/End: Original strand, 28844941 - 28845257
Alignment:
| Q |
12 |
catcatcaaacaccaccaccaataccaccaagctcttggacaaacactacctaccgataacagtagcaggcatgcgtgcagtaacagtatcgtggcttgg |
111 |
Q |
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| T |
28844941 |
catcatcaaacaccaccacca---ccaccaagctcttggaca--cactacctaccgataacagtagcaggcatgcgtgcagtaacagtatcgtggcttgg |
28845035 |
T |
|
| Q |
112 |
cacaaacccttttacttgagcttcccaaccatgacaccaaaagcaccatcaataatacgagtattggtagtacaaaaggtgaggaaccactctctacttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28845036 |
cacaaacccttttacttgagcttcccaaccatgataccaaaagcaccatcaataatacgagtattggtagtacaaaaggtgaggaaccactctctacttc |
28845135 |
T |
|
| Q |
212 |
aacttcttcctctggttcacttgagaagagctttggtataaccagaagaatcaatgccacagccaagaacagaacaacattggaagtatgagtatcatta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28845136 |
aacttcttcctctggttcacttgagaagagctttggtataaccagaagaatcaatgccacagccaagaacagaacaacattggaagtatgagtatcatta |
28845235 |
T |
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| Q |
312 |
gccgtgggtttacaatagtagt |
333 |
Q |
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||| |||||||||||||||||| |
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| T |
28845236 |
gccctgggtttacaatagtagt |
28845257 |
T |
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