View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7265_low_3 (Length: 206)

Name: NF7265_low_3
Description: NF7265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7265_low_3
NF7265_low_3
[»] chr4 (2 HSPs)
chr4 (19-193)||(11806267-11806441)
chr4 (39-126)||(39523000-39523088)
[»] chr8 (7 HSPs)
chr8 (21-126)||(5291064-5291169)
chr8 (21-124)||(14950385-14950488)
chr8 (33-124)||(15125190-15125281)
chr8 (21-126)||(5305926-5306031)
chr8 (33-126)||(5283569-5283662)
chr8 (33-122)||(5313151-5313240)
chr8 (150-193)||(5035102-5035145)
[»] chr5 (2 HSPs)
chr5 (39-126)||(33002152-33002239)
chr5 (158-193)||(15183307-15183342)
[»] chr1 (2 HSPs)
chr1 (39-126)||(6076203-6076290)
chr1 (150-193)||(6076655-6076698)
[»] chr6 (1 HSPs)
chr6 (34-130)||(31527062-31527158)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 11806441 - 11806267
Alignment:
Q  19 gttgttaccaagaatgcaccattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11806441 gttgttaccaagaatgcaccattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctc 11806342  T
Q  119 tatccattttgaagatccatggcagattgggtggtacattaacaagttttccggcaacaaccatggtcgtgtgtg 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11806341 tatccattttgaagatccatggcagattgggtggtacattaacaagttttccggcaacaaccatggttgtgtgtg 11806267  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 39523000 - 39523088
Alignment:
Q  39 attaaatgctgaaa-ccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctctatccatt 126  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  39523000 attaaatgctgaaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaatgatccctgaggcactatccatt 39523088  T

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Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 5291169 - 5291064
Alignment:
Q  21 tgttaccaagaatgcaccattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctcta 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5291169 tgttaccaagagtgcaccattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctcta 5291070  T
Q  121 tccatt 126  Q
    ||||||    
T  5291069 tccatt 5291064  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 14950488 - 14950385
Alignment:
Q  21 tgttaccaagaatgcaccattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctcta 120  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||| ||||||||||||||    
T  14950488 tgttaccaagagtgcaccattgaatgctgaaaccattttcacagttcttgcaacattggggaacatgggagagcctattataatgttccctgaggctcta 14950389  T
Q  121 tcca 124  Q
    ||||    
T  14950388 tcca 14950385  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 15125190 - 15125281
Alignment:
Q  33 tgcaccattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctctatcca 124  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| |||||||||||||    
T  15125190 tgcaccattgaatgctgaaaccattttcacagttcttgcaacattaaggaacatgggagaacctgttagaactatcccagaggctctatcca 15125281  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 5305926 - 5306031
Alignment:
Q  21 tgttaccaagaatgcaccattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctcta 120  Q
    |||| |||||| ||||||||| |||||||||| |||||||||| |||||| | ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  5305926 tgtttccaagagtgcaccattgaatgctgaaatcattttcacaattcttgtagcattgaggaacatggcagaacctgttaggatgatccctgaggctcta 5306025  T
Q  121 tccatt 126  Q
    ||||||    
T  5306026 tccatt 5306031  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 5283662 - 5283569
Alignment:
Q  33 tgcaccattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctctatccatt 126  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||| | ||||||| |||||||| ||||||    
T  5283662 tgcaccattgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccatt 5283569  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 5313151 - 5313240
Alignment:
Q  33 tgcaccattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctctatc 122  Q
    ||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||   |||||||| |||||||||||    
T  5313151 tgcaccattgaatgccgataccatttttacagttcttgcaacattgaggaacatgggagatcctgttcttatgatcccagaggctctatc 5313240  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 5035145 - 5035102
Alignment:
Q  150 tggtacattaacaagttttccggcaacaaccatggtcgtgtgtg 193  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||    
T  5035145 tggtacactaacaagttttccggcagcaaccatggtggtgtgtg 5035102  T

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Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 33002239 - 33002152
Alignment:
Q  39 attaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctctatccatt 126  Q
    |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||    
T  33002239 attaaatgctgaaaccattttcacagttcttgcaacatcgaagagcatgggagaacctgttagaatgatccctgaggcactatccatt 33002152  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 193
Target Start/End: Complemental strand, 15183342 - 15183307
Alignment:
Q  158 taacaagttttccggcaacaaccatggtcgtgtgtg 193  Q
    |||||||||||||||||||||||||||| |||||||    
T  15183342 taacaagttttccggcaacaaccatggtggtgtgtg 15183307  T

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Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 6076290 - 6076203
Alignment:
Q  39 attaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctctatccatt 126  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||    
T  6076290 attaaatgctgaaaccattttcacagtccttgcaacattgaggagcatgggagaacctgttagaatgattactgaggcactatccatt 6076203  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 6076655 - 6076698
Alignment:
Q  150 tggtacattaacaagttttccggcaacaaccatggtcgtgtgtg 193  Q
    ||||||||||||||||||||||||| ||||||| || |||||||    
T  6076655 tggtacattaacaagttttccggcagcaaccatagtggtgtgtg 6076698  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 31527158 - 31527062
Alignment:
Q  34 gcaccattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctctatccattttga 130  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||  | ||||||||| ||||||| |||||| || || |||||||| |||||||    
T  31527158 gcaccattgaatgctcaaaccattttcacagttcttgcaacattgaaaagcatgggagatcctgttaaaatgattccagaagctctatcgattttga 31527062  T

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