View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7266_low_1 (Length: 1131)

Name: NF7266_low_1
Description: NF7266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7266_low_1
NF7266_low_1
[»] chr2 (29 HSPs)
chr2 (677-971)||(42865892-42866186)
chr2 (677-940)||(24126284-24126547)
chr2 (677-940)||(11995602-11995867)
chr2 (677-950)||(40614907-40615172)
chr2 (297-382)||(21423365-21423455)
chr2 (297-379)||(37060081-37060168)
chr2 (297-382)||(5958966-5959056)
chr2 (297-381)||(6974517-6974606)
chr2 (303-382)||(4382213-4382297)
chr2 (298-379)||(10217357-10217443)
chr2 (297-381)||(13274201-13274289)
chr2 (298-382)||(27004450-27004539)
chr2 (299-381)||(30609686-30609773)
chr2 (301-382)||(15070389-15070475)
chr2 (297-382)||(28107487-28107577)
chr2 (297-377)||(24475936-24476021)
chr2 (288-376)||(30393597-30393690)
chr2 (839-927)||(17290261-17290349)
chr2 (298-380)||(5807321-5807407)
chr2 (297-382)||(37802835-37802925)
chr2 (297-340)||(37140180-37140223)
chr2 (292-382)||(14786235-14786324)
chr2 (340-382)||(30757183-30757225)
chr2 (738-887)||(17526665-17526814)
chr2 (298-340)||(22194329-22194371)
chr2 (321-379)||(27969511-27969574)
chr2 (306-340)||(27404661-27404695)
chr2 (1080-1113)||(12413836-12413869)
chr2 (1080-1113)||(12425896-12425929)
[»] chr5 (27 HSPs)
chr5 (677-971)||(14024910-14025204)
chr5 (727-970)||(239810-240053)
chr5 (677-936)||(32386463-32386722)
chr5 (731-927)||(30046625-30046821)
chr5 (298-382)||(39508315-39508404)
chr5 (297-380)||(34766885-34766973)
chr5 (297-381)||(3729333-3729422)
chr5 (290-381)||(8159070-8159166)
chr5 (297-381)||(41929341-41929430)
chr5 (301-381)||(21583853-21583938)
chr5 (299-382)||(9793634-9793722)
chr5 (839-927)||(18934285-18934373)
chr5 (297-382)||(9793731-9793821)
chr5 (298-377)||(9913803-9913887)
chr5 (300-381)||(21020686-21020772)
chr5 (298-382)||(20736157-20736246)
chr5 (288-370)||(25081758-25081845)
chr5 (288-370)||(25139727-25139814)
chr5 (296-335)||(2068962-2069001)
chr5 (298-377)||(3711183-3711271)
chr5 (340-382)||(38451038-38451080)
chr5 (839-927)||(4560195-4560283)
chr5 (304-375)||(20815677-20815753)
chr5 (883-923)||(17584563-17584603)
chr5 (839-902)||(18883613-18883676)
chr5 (879-916)||(26590193-26590230)
chr5 (343-380)||(41910219-41910256)
[»] chr1 (24 HSPs)
chr1 (677-971)||(6293991-6294285)
chr1 (694-940)||(16854937-16855183)
chr1 (677-938)||(28705967-28706227)
chr1 (692-941)||(39476050-39476299)
chr1 (830-971)||(38168176-38168317)
chr1 (711-905)||(5556010-5556204)
chr1 (297-382)||(39001947-39002037)
chr1 (297-381)||(6750310-6750399)
chr1 (839-927)||(22065080-22065168)
chr1 (298-376)||(794914-794997)
chr1 (300-382)||(18808781-18808868)
chr1 (297-382)||(3695406-3695496)
chr1 (305-382)||(11121865-11121947)
chr1 (290-376)||(26653945-26654036)
chr1 (297-379)||(41998881-41998968)
chr1 (298-376)||(44272362-44272446)
chr1 (290-376)||(571640-571731)
chr1 (297-379)||(24909510-24909597)
chr1 (297-370)||(1585860-1585938)
chr1 (297-344)||(4792610-4792657)
chr1 (318-382)||(36290612-36290681)
chr1 (298-338)||(9224872-9224912)
chr1 (340-382)||(7409822-7409864)
chr1 (877-927)||(11531505-11531555)
[»] chr7 (21 HSPs)
chr7 (677-971)||(38110512-38110806)
chr7 (677-971)||(46045882-46046176)
chr7 (677-940)||(8035686-8035949)
chr7 (677-940)||(45033547-45033810)
chr7 (677-940)||(5349969-5350230)
chr7 (10-126)||(9700976-9701091)
chr7 (799-941)||(5791328-5791470)
chr7 (677-941)||(3782330-3782590)
chr7 (793-941)||(7431679-7431827)
chr7 (729-893)||(2037607-2037763)
chr7 (290-380)||(8163644-8163739)
chr7 (295-382)||(40337065-40337157)
chr7 (910-971)||(22938796-22938857)
chr7 (298-382)||(41326042-41326131)
chr7 (290-380)||(2362383-2362478)
chr7 (298-382)||(28089134-28089224)
chr7 (877-927)||(24468770-24468820)
chr7 (877-927)||(24473718-24473768)
chr7 (299-376)||(35589412-35589494)
chr7 (883-923)||(14742475-14742515)
chr7 (298-335)||(31637707-31637744)
[»] chr4 (26 HSPs)
chr4 (682-971)||(1217139-1217428)
chr4 (677-971)||(1369409-1369703)
chr4 (677-950)||(28945227-28945500)
chr4 (677-940)||(44307499-44307762)
chr4 (677-971)||(36858648-36858940)
chr4 (10-126)||(13567215-13567330)
chr4 (299-381)||(12701040-12701127)
chr4 (299-382)||(21555382-21555470)
chr4 (297-382)||(36609412-36609503)
chr4 (297-382)||(23249470-23249560)
chr4 (297-382)||(35929707-35929797)
chr4 (298-375)||(56100144-56100226)
chr4 (295-382)||(19598365-19598457)
chr4 (763-927)||(4228327-4228491)
chr4 (308-380)||(827840-827917)
chr4 (298-376)||(41842789-41842871)
chr4 (298-340)||(53584612-53584654)
chr4 (297-381)||(44243696-44243785)
chr4 (322-381)||(27733401-27733465)
chr4 (839-927)||(47597469-47597557)
chr4 (297-380)||(35749385-35749473)
chr4 (786-940)||(44072917-44073062)
chr4 (341-382)||(53583470-53583511)
chr4 (877-914)||(15828312-15828349)
chr4 (879-916)||(36894306-36894343)
chr4 (879-912)||(50084499-50084532)
[»] chr8 (27 HSPs)
chr8 (677-950)||(33373173-33373446)
chr8 (677-940)||(45093416-45093679)
chr8 (677-940)||(42000250-42000513)
chr8 (680-941)||(35808180-35808441)
chr8 (677-941)||(9216198-9216463)
chr8 (831-940)||(31512268-31512378)
chr8 (677-927)||(14342826-14343075)
chr8 (297-381)||(4623850-4623939)
chr8 (300-380)||(30204649-30204734)
chr8 (297-381)||(16655978-16656067)
chr8 (300-376)||(23403601-23403682)
chr8 (295-382)||(21567705-21567797)
chr8 (300-382)||(36470134-36470222)
chr8 (286-376)||(3001382-3001477)
chr8 (300-382)||(39436844-39436931)
chr8 (300-376)||(23275532-23275613)
chr8 (297-381)||(37630002-37630091)
chr8 (297-380)||(4234178-4234266)
chr8 (297-364)||(22798541-22798613)
chr8 (298-382)||(14842309-14842398)
chr8 (300-382)||(36046528-36046614)
chr8 (298-380)||(41787497-41787584)
chr8 (296-338)||(4414225-4414267)
chr8 (304-377)||(29958518-29958596)
chr8 (298-344)||(45310057-45310103)
chr8 (839-927)||(44145936-44146024)
chr8 (844-921)||(2077946-2078023)
[»] chr3 (27 HSPs)
chr3 (677-970)||(37503064-37503355)
chr3 (737-918)||(25905846-25906027)
chr3 (683-936)||(1182469-1182738)
chr3 (741-927)||(3461463-3461650)
chr3 (729-940)||(30775576-30775787)
chr3 (300-382)||(36404221-36404308)
chr3 (295-381)||(45602982-45603073)
chr3 (298-382)||(39391958-39392047)
chr3 (839-927)||(46428788-46428876)
chr3 (297-375)||(14201717-14201798)
chr3 (297-379)||(35534482-35534569)
chr3 (297-382)||(29360482-29360572)
chr3 (297-381)||(37115887-37115976)
chr3 (855-913)||(43329064-43329122)
chr3 (297-382)||(46487270-46487359)
chr3 (845-927)||(54812127-54812209)
chr3 (309-376)||(16353494-16353566)
chr3 (839-927)||(42794718-42794806)
chr3 (677-862)||(41420422-41420608)
chr3 (297-377)||(52742352-52742437)
chr3 (311-382)||(3618339-3618415)
chr3 (295-382)||(48944104-48944196)
chr3 (340-380)||(47599412-47599452)
chr3 (313-382)||(54882991-54883065)
chr3 (874-927)||(36275929-36275982)
chr3 (844-927)||(43912131-43912214)
chr3 (1079-1113)||(14783732-14783766)
[»] scaffold0306 (1 HSPs)
scaffold0306 (290-382)||(13055-13152)
[»] scaffold0152 (1 HSPs)
scaffold0152 (290-382)||(22175-22272)
[»] chr6 (12 HSPs)
chr6 (300-382)||(2814889-2814976)
chr6 (298-382)||(444522-444611)
chr6 (839-927)||(1222859-1222947)
chr6 (297-380)||(6200163-6200251)
chr6 (298-382)||(1067801-1067891)
chr6 (300-382)||(24640351-24640438)
chr6 (294-382)||(23774066-23774159)
chr6 (300-381)||(26393989-26394075)
chr6 (297-339)||(12324172-12324214)
chr6 (879-936)||(20679009-20679066)
chr6 (321-380)||(34710135-34710199)
chr6 (340-382)||(4032326-4032368)
[»] scaffold0302 (1 HSPs)
scaffold0302 (297-381)||(18503-18592)
[»] scaffold0140 (1 HSPs)
scaffold0140 (297-382)||(21476-21566)
[»] scaffold1248 (1 HSPs)
scaffold1248 (299-381)||(970-1057)
[»] scaffold0952 (1 HSPs)
scaffold0952 (299-381)||(1256-1343)
[»] scaffold0025 (1 HSPs)
scaffold0025 (297-379)||(67872-67959)
[»] scaffold0532 (1 HSPs)
scaffold0532 (298-382)||(11320-11409)
[»] scaffold0121 (1 HSPs)
scaffold0121 (300-382)||(37402-37489)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 677 - 971
Target Start/End: Original strand, 42865892 - 42866186
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||||||||| |||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  42865892 aaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaa 42865991  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42865992 ggcaacaaaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagagtcttt 42866091  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttcctttgggctctgagagccctcttttgtacc 971  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42866092 tgtttgatgatatttccggagcttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctctgagagccctcttttgtacc 42866186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 677 - 940
Target Start/End: Complemental strand, 24126547 - 24126284
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    |||||||||||||||| |||  |||||||| |||||||  | |||| || ||||||||||||||||||||||||||||||||||  |||| ||||  |||    
T  24126547 aaattgcaattttagttgaatgactcctactttggtcaagcgtattcgacaacttttgagtttgagttggactgtcaaaattacacatacatggcgtgaa 24126448  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    ||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  24126447 ggcaacataagtgcagattgacttgctaatttcagcatttcgatggattttctagattttcatattctggagactccccctagtgagcttcagagtcttt 24126348  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttcttt 940  Q
    ||||||||||||||||| | |||||||||||||||||  |||||||||||| ||||||||||||    
T  24126347 tgtttgatgatatttccagggcttgcatgcctaggaacttccgtttaatttcttagttttcttt 24126284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 677 - 940
Target Start/End: Complemental strand, 11995867 - 11995602
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagaca--tatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcagg 774  Q
    ||||||||||||||||||||  ||| |||| |||||||| |   |||| || |||||||||||||||||||||||||||||||||||||||||||||  |    
T  11995867 aaattgcaattttagtggaatgacttctactttggtcaggcgcgtattcgacaacttttgagtttgagttggactgtcaaaattacctatacttggcgtg 11995768  T
Q  775 aaggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatct 874  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |||| |||    
T  11995767 aaggcaacagaagtgcagattgtcttgctaatttcagcatttcgatggattttctatattttcatattctggagactccccctagtgagctccagagtct 11995668  T
Q  875 tttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttcttt 940  Q
    ||| ||| ||||||||||  | ||||||||| ||||||| ||||||||||||| ||||||||||||    
T  11995667 tttttttaatgatatttcaagggcttgcatgtctaggaacgtccgtttaatttcttagttttcttt 11995602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 677 - 950
Target Start/End: Complemental strand, 40615172 - 40614907
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||| |||||||||||||||| |||||||  | |||| || |||||||||||||||||||||||||||| |||||  |||||||||  |||    
T  40615172 aaattgcaattttggtggaacaactcctactttggtcaagcgtattcgacaacttttgagtttgagttggactgtcaatattactcatacttggcgtgaa 40615073  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    || |||||||||||||||||| || ||||||||||||||||||         | |||||||||||| |||||| ||| | |||||||||||||| |||||    
T  40615072 ggtaacagaagtgcagattggtttgctaatttcagcatttcga---------tggattttcatattatggagaatccccttagtgagcttcagagtcttt 40614982  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttc-ctttgggct 950  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||    
T  40614981 tgtttgatgatatttctggggcttgcatgcctaggaacgtccgtttaatttcttagttttctttctctttgggct 40614907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 21423365 - 21423455
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||| || |||||||||||||||||||||||    
T  21423365 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcatctcacaatagttatcctattacatgttttagttttagtccc 21423455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 37060168 - 37060081
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagttttagt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||| |||||||||||||||||||||||    
T  37060168 ctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttagt 37060081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 5958966 - 5959056
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||     |||||  ||||||||| ||||||||||||||||||||||||||    
T  5958966 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgtaatagttatccttttacatgttttagttttagtccc 5959056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 6974606 - 6974517
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||||||||||||||||||||||| |||     ||||||||||||||||  ||||||||||||||||||||||||    
T  6974606 ctgtttgaaatagtttttgttttcagtttttgaaatatataagtgctcttctcacaatagttatcattttacatgttttagttttagtcc 6974517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 4382213 - 4382297
Alignment:
Q  303 gaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||||||||||||||||||     ||||||||||||||||  |||||||||||||||||||||||||    
T  4382213 gaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcattttacatgttttagttttagtccc 4382297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 10217443 - 10217357
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttc-----tcacaatagttattcttttacatgttttagttttagt 379  Q
    ||||||||||||||||| |||||||||||||||||||||||||||     | | |||||||||||||||||||||||||||||||||    
T  10217443 tgtttgaaatagtttttattttcagtttttgaaatatacaagttccctttttagaatagttattcttttacatgttttagttttagt 10217357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 13274201 - 13274289
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||||||| | |||||||||||||||||     ||||||||||||||| ||||||||||||||||||||||||||    
T  13274201 ctgtttgaaatagtttttgtttttaatttttgaaatatacaagtcctcttctcacaatagtta-tcttttacatgttttagttttagtcc 13274289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 27004450 - 27004539
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||||| ||||||||||||| |||     |||||||||||||||| |||||| |||||||||||||||||||    
T  27004450 tgtttgaaatagtttttgttttcaatttttgaaatatataagtcctcttctcacaatagttatccttttatatgttttagttttagtccc 27004539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 30609773 - 30609686
Alignment:
Q  299 gtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||| |||||||||||||||| |||||||||||||||     |||||||||||||||  ||||||||||||||||||||||||    
T  30609773 gtttgaaatcgtttttgttttcagttattgaaatatacaagtcttcttctcacaatagttatcattttacatgttttagttttagtcc 30609686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 301 - 382
Target Start/End: Complemental strand, 15070475 - 15070389
Alignment:
Q  301 ttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||||      |||||||||||||||| |||||| ||||||| |||||||||||    
T  15070475 ttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttatatgtttttgttttagtccc 15070389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 28107577 - 28107487
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||| | ||||||||||||||||||||||||||||| |     ||||||||||||||| ||||||||||||||||||||| ||||    
T  28107577 ctgtttgaaacaatttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttaatccc 28107487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 24476021 - 24475936
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagtttta 377  Q
    ||||||||||||||||||||||||||||||||||||||||||      || |||||||||||||  ||||||||||||||||||||    
T  24476021 ctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcttcttatcacaatagttatctttttacatgttttagtttta 24475936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 288 - 376
Target Start/End: Complemental strand, 30393690 - 30393597
Alignment:
Q  288 aataagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaagttctc-----acaatagttattcttttacatgttttagtttt 376  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||     | ||| ||||| ||||||||||||||||||||    
T  30393690 aataggggtttgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttttgataatggttatccttttacatgttttagtttt 30393597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 839 - 927
Target Start/End: Original strand, 17290261 - 17290349
Alignment:
Q  839 tattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||| ||||||||||||||| ||||||||  || ||  ||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  17290261 tattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctagaaatgtccggttaattt 17290349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 5807407 - 5807321
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttc-----tcacaatagttattcttttacatgttttagttttagtc 380  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||     ||||||||||||| |||||| |||||||||||||||||    
T  5807407 tgtttgaaatagtttttgttt-cagtttttgaaatatacaaattcccttttcacaatagttatccttttatatgttttagttttagtc 5807321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 37802925 - 37802835
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||| | |||||||||||||||||     |||||| |||| ||||  |||||||||||||||||||||||||    
T  37802925 ctgtttgaaatagtttttgttttaaatttttgaaatatacaagtcttcttctcataatatttatctttttacatgttttagttttagtccc 37802835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 37140223 - 37140180
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37140223 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagt 37140180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 14786235 - 14786324
Alignment:
Q  292 agggtctgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||| ||||||||||||||||||||||||      ||||||||||||||     ||||||||||||||| || |||||||||||||||||||||||    
T  14786235 agggcctgtttgaaatagtttttgttttc------tgaaatatacaagtcctcttctcacaatagttatcctattacatgttttagttttagtccc 14786324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 30757225 - 30757183
Alignment:
Q  340 ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  30757225 ttctcacaatagttatccttttacatgttttagttttagtccc 30757183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 738 - 887
Target Start/End: Original strand, 17526665 - 17526814
Alignment:
Q  738 ttgagttggactgtcaaaattacctatacttggcaggaaggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttc 837  Q
    ||||||||||||||| |||||| | |||| | ||  || ||||||||||||| || ||| ||| ||||||| |||||||||| ||||| | |  |||||     
T  17526665 ttgagttggactgtccaaattaaccatacattgcgtgagggcaacagaagtgtagtttgacttgctaattttagcatttcgatggattctatgaatttta 17526764  T
Q  838 atattctggagactcctcctagtgagcttcagaatcttttgtttgatgat 887  Q
    || || ||||| ||||||||  ||| ||||||| |||||| |||| ||||    
T  17526765 atcttttggagcctcctccttatgaacttcagagtcttttatttgttgat 17526814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 22194371 - 22194329
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaagt 340  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  22194371 tgtttgaaatagtttttgtttttggtttttgaaatatacaagt 22194329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 27969511 - 27969574
Alignment:
Q  321 agtttttgaaatatacaagttc-----tcacaatagttattcttttacatgttttagttttagt 379  Q
    ||||||||||||||||||||||     ||||||||||||| |||||| |||||||| |||||||    
T  27969511 agtttttgaaatatacaagttcacttctcacaatagttatccttttatatgttttaattttagt 27969574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 27404695 - 27404661
Alignment:
Q  306 atagtttttgttttcagtttttgaaatatacaagt 340  Q
    |||||||||||||| ||||||||||||||||||||    
T  27404695 atagtttttgtttttagtttttgaaatatacaagt 27404661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1080 - 1113
Target Start/End: Original strand, 12413836 - 12413869
Alignment:
Q  1080 taggcttaaatattgcatttgtccctgcaaatat 1113  Q
    ||||||||||||||||| ||||||||||||||||    
T  12413836 taggcttaaatattgcacttgtccctgcaaatat 12413869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1080 - 1113
Target Start/End: Original strand, 12425896 - 12425929
Alignment:
Q  1080 taggcttaaatattgcatttgtccctgcaaatat 1113  Q
    ||||||||||||||||| ||||||||||||||||    
T  12425896 taggcttaaatattgcacttgtccctgcaaatat 12425929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 677 - 971
Target Start/End: Original strand, 14024910 - 14025204
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||||||||| |||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  14024910 aaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaa 14025009  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14025010 ggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagagtcttt 14025109  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttcctttgggctctgagagccctcttttgtacc 971  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14025110 tgtttgatgatatttccggggcttgcatgcctaagaacgtccgtttaatttcttagttttctttcctttgggctctgagagccctcttttgtacc 14025204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 727 - 970
Target Start/End: Complemental strand, 240053 - 239810
Alignment:
Q  727 aacttttgagtttgagttggactgtcaaaattacctatacttggcaggaaggcaacagaagtgcagattggcttactaatttcagcatttcgacggattt 826  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  240053 aacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcaatggattt 239954  T
Q  827 tctagattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatt 926  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  239953 tctagattttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaacgtccgtttaatt 239854  T
Q  927 tattagttttctttcctttgggctctgagagccctcttttgtac 970  Q
    | |||||||||||||||||| |||||||||||||||||||||||    
T  239853 tcttagttttctttcctttgagctctgagagccctcttttgtac 239810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 677 - 936
Target Start/End: Original strand, 32386463 - 32386722
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||||||||| |||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||| |||||||||  |||    
T  32386463 aaattgcaattttagtggaacgactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgtgaa 32386562  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    ||||||| |||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  32386563 ggcaacataagtgctgattgacttgctaatttcagcatttcgatggattttctagattttcatattctggagactccccctagtgagcttcagagtcttt 32386662  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagtttt 936  Q
    |||||||||||||||||||  |||| |||||||| || | ||||||||||| ||| ||||    
T  32386663 tgtttgatgatatttccgggacttgtatgcctagaaacgcccgtttaatttcttaatttt 32386722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 731 - 927
Target Start/End: Original strand, 30046625 - 30046821
Alignment:
Q  731 tttgagtttgagttggactgtcaaaattacctatacttggcaggaaggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttcta 830  Q
    |||||||||||||||||||||||||||||||||| |||| |  ||||  || ||||||| |||||||||  ||||||||| ||||| || ||||||||||    
T  30046625 tttgagtttgagttggactgtcaaaattacctattcttgacgtgaagataaaagaagtgtagattggctcgctaatttcaacattttgatggattttcta 30046724  T
Q  831 gattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||||||||||| |||||| ||| ||||||||| |||||| |||||||||||||||||||| |  ||||||||| |||||||| |||||||||||||    
T  30046725 gattttcatattatggagaatccccctagtgagtttcagagtcttttgtttgatgatattttcaaagcttgcatacctaggaacgtccgtttaattt 30046821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 298 - 382
Target Start/End: Complemental strand, 39508404 - 39508315
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  39508404 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtctttttctcacaatagttattcttttacatgttttagttttagtccc 39508315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 34766973 - 34766885
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtc 380  Q
    ||||||||||||||||||||||||| ||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  34766973 ctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcacaatagttattcttttacatgttttagttttagtc 34766885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 3729422 - 3729333
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    |||||||||||||||||||||||||||||||||||||||||||     ||||||||||| |||| |||||||||||||||||||||||||    
T  3729422 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaataattatccttttacatgttttagttttagtcc 3729333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 8159166 - 8159070
Alignment:
Q  290 taagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||     ||||||||||| |||| |||||||||||||||||||||||||    
T  8159166 taagagtctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcacaataattatccttttacatgttttagttttagtcc 8159070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 41929341 - 41929430
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagttc-----tcacaatagttattcttttacatgttttagttttagtcc 381  Q
    |||||||||||||||||||||||||||||||||||||| |||||||     || |||||||||| |||||||||||||||||||||||||    
T  41929341 ctgtttgaaatagtttttgttttcagtttttgaaatatgcaagttctcttttcgcaatagttatccttttacatgttttagttttagtcc 41929430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 21583853 - 21583938
Alignment:
Q  301 ttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    |||||||||||||||||||||||||||||||||||||||     |||||| |||||||||  ||||||||||||||||||||||||    
T  21583853 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcataatagttatctttttacatgttttagttttagtcc 21583938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 9793722 - 9793634
Alignment:
Q  299 gtttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||||||      || | ||||||||||| ||||||||||||||||||||||||||    
T  9793722 gtttgaaatagtttttgttttcagtttttgaaatatacaaatcccctttttacaatagttatccttttacatgttttagttttagtccc 9793634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 839 - 927
Target Start/End: Original strand, 18934285 - 18934373
Alignment:
Q  839 tattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||| ||||||||||||||| ||||||||  || ||  ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  18934285 tattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaattt 18934373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 9793821 - 9793731
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||      || | ||||||||||| ||||||| ||||||||||||||||||    
T  9793821 ctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcccctttttacaatagttatccttttacttgttttagttttagtccc 9793731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 298 - 377
Target Start/End: Original strand, 9913803 - 9913887
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcac-----aatagttattcttttacatgttttagtttta 377  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||      |||||||||  ||||||||||||||||||||    
T  9913803 tgtttgaaatagtttttgtttttagtttttgaaatatacaagttctcatctcataatagttatctttttacatgttttagtttta 9913887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 21020686 - 21020772
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    |||||||||||||||||||||||||||||||||||| |||     ||||| |||||||||| |||||| ||| ||||||||||||||    
T  21020686 tttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctcgcaatagttatccttttatatgatttagttttagtcc 21020772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 298 - 382
Target Start/End: Complemental strand, 20736246 - 20736157
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||     | |||||||||||||  |||||||||||||||||||||||||    
T  20736246 tgtttgaaatagtttttgttttcaatttttgaaaaatataagtcctcctttcacaatagttatcattttacatgttttagttttagtccc 20736157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 25081758 - 25081845
Alignment:
Q  288 aataagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgtttt 370  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||||||||     ||||||||||||||||  ||||| |||||||    
T  25081758 aataagagcctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcacaatagttatcattttatatgtttt 25081845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 25139727 - 25139814
Alignment:
Q  288 aataagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgtttt 370  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||||||||     ||||||||||||||||  ||||| |||||||    
T  25139727 aataagagcctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcacaatagttatcattttatatgtttt 25139814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 2068962 - 2069001
Alignment:
Q  296 tctgtttgaaatagtttttgttttcagtttttgaaatata 335  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2068962 tctgtttgaaatagtttttgttttcagtttttgaaatata 2069001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 298 - 377
Target Start/End: Original strand, 3711183 - 3711271
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaa----atatacaagttc-----tcacaatagttattcttttacatgttttagtttta 377  Q
    |||||||||||||||||||||||||||||||||    ||||||||||||     |||||||||||||  ||||||||||||||| ||||    
T  3711183 tgtttgaaatagtttttgttttcagtttttgaaatatatatacaagttctattttcacaatagttatctttttacatgttttagattta 3711271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 38451080 - 38451038
Alignment:
Q  340 ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  38451080 ttctcacaatagttatccttttacatgttttagttttagtccc 38451038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 839 - 927
Target Start/End: Complemental strand, 4560283 - 4560195
Alignment:
Q  839 tattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||| ||||||||||||||| ||||||||  || ||  |||||||||||||||| || |||| ||||||||| ||||| || |||||||    
T  4560283 tattttggagactcctcctactgagcttcgaaagctcatgtttgatgatatttctggggcttacatgcctagaaatgttcggttaattt 4560195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 20815677 - 20815753
Alignment:
Q  304 aaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttt 375  Q
    |||||||||||||||||||||||| |||||||||||     ||||||||||||||||  ||||| ||||||| ||||    
T  20815677 aaatagtttttgttttcagtttttaaaatatacaagtccttttctcacaatagttatcattttatatgtttttgttt 20815753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 883 - 923
Target Start/End: Complemental strand, 17584603 - 17584563
Alignment:
Q  883 atgatatttccggagcttgcatgcctaggaatgtccgttta 923  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  17584603 atgatatttttggagcttgcatgcctaggaatgtccgttta 17584563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 839 - 902
Target Start/End: Original strand, 18883613 - 18883676
Alignment:
Q  839 tattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgc 902  Q
    |||| ||||||||||||||| ||||||||| || ||  ||||||||||||||||| | ||||||    
T  18883613 tattttggagactcctcctactgagcttcaaaagctcatgtttgatgatatttccagggcttgc 18883676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 916
Target Start/End: Complemental strand, 26590230 - 26590193
Alignment:
Q  879 tttgatgatatttccggagcttgcatgcctaggaatgt 916  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  26590230 tttgatgatattttcggagcttgcatgtctaggaatgt 26590193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 41910256 - 41910219
Alignment:
Q  343 tcacaatagttattcttttacatgttttagttttagtc 380  Q
    |||||||||||||  |||||||||||||||||||||||    
T  41910256 tcacaatagttatcattttacatgttttagttttagtc 41910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 677 - 971
Target Start/End: Original strand, 6293991 - 6294285
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||||||||| |||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  6293991 aaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacacatacttggcgggaa 6294090  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6294091 ggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagagtcttt 6294190  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttcctttgggctctgagagccctcttttgtacc 971  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6294191 tgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctctgagagccctcttttgtacc 6294285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 694 - 940
Target Start/End: Original strand, 16854937 - 16855183
Alignment:
Q  694 gaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaaggcaacagaagtgcaga 793  Q
    |||| |||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  16854937 gaacgactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaacagaagtgcaga 16855036  T
Q  794 ttggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttcc 893  Q
    ||||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||| |    
T  16855037 ttggcttgctaatttcagcatttcaatggattttctagattttcatattctgaagactccccctagtgagcttcagagtcttttgtttgataatattttc 16855136  T
Q  894 ggagcttgcatgcctaggaatgtccgtttaatttattagttttcttt 940  Q
    || ||||||||| | ||||| ||||||||||||| ||||||||||||    
T  16855137 ggggcttgcatgtcaaggaacgtccgtttaatttcttagttttcttt 16855183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 677 - 938
Target Start/End: Original strand, 28705967 - 28706227
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||| ||||||| |||||||| |||||||  | |||| || ||||||||||||||||||||||||||||||| ||| |||||||||  |||    
T  28705967 aaattgcaattttggtggaacgactcctaccttggtcaagcgtattcgacaacttttgagtttgagttggactgtcaaaataacccatacttggcgtgaa 28706066  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    ||||||| ||||| | |||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||| | | |||||| ||||||| | |||||    
T  28706067 ggcaacaaaagtgtatattggcttgctaatttcagcatttcgatggattttttagattttcatattttggagaatacccctagtaagcttcatagtcttt 28706166  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttct 938  Q
    ||||||||||||||| ||| || |||||||||||||| ||||||||||||| ||||||||||    
T  28706167 tgtttgatgatattt-cggggcctgcatgcctaggaacgtccgtttaattttttagttttct 28706227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 692 - 941
Target Start/End: Original strand, 39476050 - 39476299
Alignment:
Q  692 tggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaaggcaacagaagtgca 791  Q
    |||||| |||||||| ||||||||  ||||| |||| |||||||||||| ||||||| |||||||||||  |||||||||  |||||||||| |||||||    
T  39476050 tggaacgactcctactttggtcaggtatattcgatagcttttgagtttgggttggaccgtcaaaattactcatacttggcgtgaaggcaacaaaagtgca 39476149  T
Q  792 gattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgatattt 891  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||| |||||||    
T  39476150 gattgtcttgctaatttcagcatttcgatggattttctagattttcatatcctgaagactccccctagtgaacttcaaaatcttttgtttgacgatattt 39476249  T
Q  892 ccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttc 941  Q
    | | | |||||||||||||||| ||||||||||||| ||| |||||||||    
T  39476250 ctgaaacttgcatgcctaggaacgtccgtttaatttcttacttttctttc 39476299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 830 - 971
Target Start/End: Complemental strand, 38168317 - 38168176
Alignment:
Q  830 agattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttat 929  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |    
T  38168317 agattttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttct 38168218  T
Q  930 tagttttctttcctttgggctctgagagccctcttttgtacc 971  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38168217 tagttttctttcctttgggctctgagagccctcttttgtacc 38168176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 711 - 905
Target Start/End: Original strand, 5556010 - 5556204
Alignment:
Q  711 gtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaaggcaacagaagtgcagattggcttactaatttca 810  Q
    ||||||| |||| || ||||||||||||||| ||||||||||||||||||| ||| |||||| ||||| |||| ||||||||| || ||| |||||||||    
T  5556010 gtcagacgtattcgacaacttttgagtttgatttggactgtcaaaattacccatatttggcatgaaggtaacataagtgcagaatgacttgctaatttca 5556109  T
Q  811 gcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatg 905  Q
    |||||||||  |||||| |||||||||||||||| ||||||||  ||| |||||||| || |||||||||||||||||||||  | |||||||||    
T  5556110 gcatttcgatagattttttagattttcatattctagagactccctctaatgagcttctgattcttttgtttgatgatatttctagggcttgcatg 5556204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 39001947 - 39002037
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagttctc-----acaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||      |||||||||| ||||||||||||||||||||||||||    
T  39001947 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctctttttgcaatagttatccttttacatgttttagttttagtccc 39002037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 6750399 - 6750310
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||||||||||||||||||||||||||      || |||||||||||||  ||||||||||||||||||||||||    
T  6750399 ctgtttgaaatagtttttgttttcagtttttgaaatatacaaatccctttttcacaatagttatctttttacatgttttagttttagtcc 6750310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 839 - 927
Target Start/End: Complemental strand, 22065168 - 22065080
Alignment:
Q  839 tattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||| ||||||||||||||| ||||||||  || ||  ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  22065168 tattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaattt 22065080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 794914 - 794997
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagtttt 376  Q
    ||||||||||| |||||||||||||||||||||||||||| |     |||||||||||||||| ||||||||||||||||||||    
T  794914 tgtttgaaatattttttgttttcagtttttgaaatatacaggtcttcttctcacaatagttatccttttacatgttttagtttt 794997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 300 - 382
Target Start/End: Original strand, 18808781 - 18808868
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||| |||||||||||||||| ||||||||||||||     ||||||||||||||| |||||| |||||||||||||||||||    
T  18808781 tttgaaataatttttgttttcagtttatgaaatatacaagtcttcttctcacaatagttatccttttatatgttttagttttagtccc 18808868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 3695406 - 3695496
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||||| ||||||||||||||||||     || ||| |||||||||  |||||||||||||||||||||||||    
T  3695406 ctgtttgaaatagtttttgttttcggtttttgaaatatacaagtccccttttcataatagttatcattttacatgttttagttttagtccc 3695496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 11121865 - 11121947
Alignment:
Q  305 aatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||     || ||||||||||||  |||||||||||||||||||||||||    
T  11121865 aatagtttttgttttcagtttttgaaatatacaagtcatcttcgcacaatagttatcattttacatgttttagttttagtccc 11121947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 290 - 376
Target Start/End: Complemental strand, 26654036 - 26653945
Alignment:
Q  290 taagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagtttt 376  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||| |     |||||||||| ||||| ||||||||||||||| ||||    
T  26654036 taagggcctgtttgaaatagtttttgttttcaatttttgaaatatacaggtcctcttctcacaatggttatccttttacatgttttaatttt 26653945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 41998968 - 41998881
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagt 379  Q
    ||||||||||||||||||||||||| |||||||||||||||||     ||||||||||| ||||  ||||| ||||||||||||||||    
T  41998968 ctgtttgaaatagtttttgttttcattttttgaaatatacaagtcttcttctcacaatatttatctttttatatgttttagttttagt 41998881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 44272446 - 44272362
Alignment:
Q  298 tgtttgaaatagtttttgttttcagttttt-gaaatatacaagttctc-----acaatagttattcttttacatgttttagtttt 376  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||     | ||| |||||| |||||||||||||||||||    
T  44272446 tgtttgaaatagtttttgttttcagttttttgaaatatacaagttctcttttcataatggttattattttacatgttttagtttt 44272362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 376
Target Start/End: Original strand, 571640 - 571731
Alignment:
Q  290 taagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagtttt 376  Q
    |||||| || |||||||||||||||||||||||||||||||||||| | |     |||||| |||||||||  |||||||||||||||||||    
T  571640 taagggcctctttgaaatagtttttgttttcagtttttgaaatatatacgtcctcttctcataatagttatcattttacatgttttagtttt 571731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 24909597 - 24909510
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagt 379  Q
    |||||||||||||||||| |||||||||||| |||||||| ||     |||||||||||||||| ||||||||| |||| ||||||||    
T  24909597 ctgtttgaaatagtttttattttcagtttttaaaatatactagttctcttctcacaatagttatccttttacatattttcgttttagt 24909510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 1585860 - 1585938
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgtttt 370  Q
    |||||||||||||||| |||||| |||||||||||||||||||     |||| ||||||||||| ||||||||||||||    
T  1585860 ctgtttgaaatagtttatgtttttagtttttgaaatatacaagtcttcttcttacaatagttatccttttacatgtttt 1585938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 4792657 - 4792610
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagttctc 344  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  4792657 ctgtttaaaatagtttttgtttttagtttttgaaatatacaagttctc 4792610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 36290612 - 36290681
Alignment:
Q  318 ttcagtttttgaaatatacaagttctc-----acaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||| |||     |||||||||||  |||||||||||||||||||||||||    
T  36290612 ttcagtttttgaaatatacaagtcctcttctgacaatagttatcattttacatgttttagttttagtccc 36290681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 9224912 - 9224872
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaa 338  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  9224912 tgtttgaaatagtttttgttttcagtttttgaaatacacaa 9224872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 7409864 - 7409822
Alignment:
Q  340 ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  7409864 ttctcataatagttatccttttacatgttttagttttagtccc 7409822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 877 - 927
Target Start/End: Original strand, 11531505 - 11531555
Alignment:
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||| |||||||    
T  11531505 tgtttgatgatattttcggagcttgcatgtctaagaatgtccgattaattt 11531555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-129; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 677 - 971
Target Start/End: Complemental strand, 38110806 - 38110512
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    |||||||||||||||||||||||||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  38110806 aaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaa 38110707  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  38110706 ggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattctggagactccacctagtgagcttcagagtcttt 38110607  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttcctttgggctctgagagccctcttttgtacc 971  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  38110606 tgtttgatgatatttctggggcttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctctgagagccctcttttatacc 38110512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 677 - 971
Target Start/End: Original strand, 46045882 - 46046176
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||| ||||| |||||||| |||||||| | |||| || |||||||||||||||||||||||||||||| |||  ||||||||| ||||    
T  46045882 aaattgcaattttagcggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaactacacatacttggcgggaa 46045981  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46045982 ggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagagtcttt 46046081  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttcctttgggctctgagagccctcttttgtacc 971  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  46046082 tgtttgatgatatttccggggcttgcatgtctaggaacgtccgtttaatttcttagttttctttcctttgggctttgagagccctcttttgtacc 46046176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 677 - 940
Target Start/End: Original strand, 8035686 - 8035949
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||||||||| |||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||  |||    
T  8035686 aaattgcaattttagtggaacgactcctactttggtcagacgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgtgaa 8035785  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||    
T  8035786 ggcaacagaagtgcagattggcttgctaatttcagcatttcgatggattttctagattttcatattctggagactccccctagttagcttcagagtcttt 8035885  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttcttt 940  Q
    ||||||||||||||||||| |||||||||||||| || ||| ||||||||| ||||||||||||    
T  8035886 tgtttgatgatatttccggggcttgcatgcctagaaacgtcagtttaatttcttagttttcttt 8035949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 677 - 940
Target Start/End: Complemental strand, 45033810 - 45033547
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||||||||| |||||||| || ||||  | |||| || ||||||||||||||||||||||||||||||||||| ||| |||||  |||    
T  45033810 aaattgcaattttagtggaacgactcctactttagtcacgcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatatttggcttgaa 45033711  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    | ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||  |||||| |||||    
T  45033710 gacaacataagtgcagattggcttgctaatttcagcatttcgatggattttctagattttcatattctggagactccccctaatgaatttcagagtcttt 45033611  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttcttt 940  Q
    |||||||||||||||||||||||| |||||| |||||  |||||||||||| ||||||||||||    
T  45033610 tgtttgatgatatttccggagcttacatgcccaggaacatccgtttaattttttagttttcttt 45033547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 677 - 940
Target Start/End: Original strand, 5349969 - 5350230
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    |||||| |||||||||||||| |||||||| ||||| || | |||  || ||||||||||||||||||||||||||||||||||| |||||||||  |||    
T  5349969 aaattgaaattttagtggaacgactcctactttggttaggcctatacgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgtgaa 5350068  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    ||||||| |||||||||||||||| |||||||||||||||||| |||||||||  || |||||||||| |||||||| |||||||||||||||| |||||    
T  5350069 ggcaacaaaagtgcagattggcttgctaatttcagcatttcgatggattttct--atattcatattctagagactccccctagtgagcttcagagtcttt 5350166  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttcttt 940  Q
    ||||||||||||||||| |  |||| ||||||||||| ||||||||||||  ||||||||||||    
T  5350167 tgtttgatgatatttccaggacttgtatgcctaggaacgtccgtttaattccttagttttcttt 5350230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 9700976 - 9701091
Alignment:
Q  10 gacatcagtgacgaaaatcaaaactcaacactcttagccaatagaacaccaaaatcacactttaaagagaagaaaaaggggagaaatacatctacaatga 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9700976 gacatcagtgacgaaaatcaaaactcaacactcttagccaacagaacaccaaaatcacactttaaagagaagaaaaaggggagaaatacatc-acaatga 9701074  T
Q  110 caatgggttatgtgcat 126  Q
    |||| ||||||||||||    
T  9701075 caataggttatgtgcat 9701091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 799 - 941
Target Start/End: Complemental strand, 5791470 - 5791328
Alignment:
Q  799 ttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagc 898  Q
    |||||||||||||||||| || | ||||||||||||||||||||| |||||||||  ||||||||||||||| |||||||||||||||||||| ||| ||    
T  5791470 ttactaatttcagcatttagatgaattttctagattttcatattccggagactccctctagtgagcttcagagtcttttgtttgatgatattttcggggc 5791371  T
Q  899 ttgcatgcctaggaatgtccgtttaatttattagttttctttc 941  Q
    ||||||| ||| ||| ||||||||||||| |||||||||||||    
T  5791370 ttgcatgtctaagaacgtccgtttaatttcttagttttctttc 5791328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 677 - 941
Target Start/End: Original strand, 3782330 - 3782590
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    |||||||||||||||| |||| |||| ||| |||||||||| ||||||  |||||||||||||||||||||| | ||||||||   ||| |||    |||    
T  3782330 aaattgcaattttagtagaacgactcttactttggtcagacgtatttgggaacttttgagtttgagttggaccgacaaaattattcatatttgaggtgaa 3782429  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    ||||||| ||||| |||||| ||| |||||||||||||||||| | ||||| || ||||||||||||||||||    ||||| ||| ||||||| ||||     
T  3782430 ggcaacaaaagtgtagattgacttgctaatttcagcatttcgatgaattttttaaattttcatattctggaga----tcctaatgaacttcagagtctta 3782525  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttc 941  Q
     ||||||| |||||||  ||  || ||||||||  || || |||||||||| |||||||||||||    
T  3782526 cgtttgataatatttctagaatttacatgcctaaaaacgttcgtttaatttcttagttttctttc 3782590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 793 - 941
Target Start/End: Complemental strand, 7431827 - 7431679
Alignment:
Q  793 attggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttc 892  Q
    |||||||| ||||||||| |||||| | ||||| | |||||||| |||||||||||| |||||||| ||||||||||| | || | |||||||||||||     
T  7431827 attggcttgctaatttcaacatttcaatggattctttagatttttatattctggagaatcctcctaatgagcttcagagtgttgtatttgatgatatttt 7431728  T
Q  893 cggagcttgcatgcctaggaatgtccgtttaatttattagttttctttc 941  Q
    |||||||| |||| ||||||| |||| ||||| || |||||||||||||    
T  7431727 cggagcttacatgtctaggaacgtccatttaaatttttagttttctttc 7431679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 729 - 893
Target Start/End: Complemental strand, 2037763 - 2037607
Alignment:
Q  729 cttttgagtttgagttggactgtcaaaattacctatacttggcaggaaggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttc 828  Q
    |||||||||||||||| |||||||||||||| | ||||||||   |||| ||||||||||||| |||||||| |||||||||        |  ||||||     
T  2037763 cttttgagtttgagttagactgtcaaaattaaccatacttggtgtgaagacaacagaagtgcaaattggcttgctaatttca--------atagattttt 2037672  T
Q  829 tagattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttcc 893  Q
    |||||||||||||| |||||||||  |||| ||| ||||||| || |||||||||||||||||||    
T  2037671 tagattttcatattttggagactctccctaatgaacttcagagtcatttgtttgatgatatttcc 2037607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 8163739 - 8163644
Alignment:
Q  290 taagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtc 380  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||     |||||||||||||||  |||||||||||||||||||||||    
T  8163739 taagagtctgtttgaaatagtttttgttttctgtttttgaaatatacaagttctcttctcacaatagttatctttttacatgttttagttttagtc 8163644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 295 - 382
Target Start/End: Complemental strand, 40337157 - 40337065
Alignment:
Q  295 gtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||     ||||||||||||||||  |||||||||||||||||||||||||    
T  40337157 gtctgtttgaaatagtttttgttttcagttttcgaaatatgcaagtcatcttctcacaatagttatcattttacatgttttagttttagtccc 40337065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 910 - 971
Target Start/End: Complemental strand, 22938857 - 22938796
Alignment:
Q  910 ggaatgtccgtttaatttattagttttctttcctttgggctctgagagccctcttttgtacc 971  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22938857 ggaacgtccgtttaatttcttagttttctttcctttgggctctgagagccctcttttgtacc 22938796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 41326042 - 41326131
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||| ||||||||||||||| || |     ||||||||||||||| ||||||||||||||||||||||||||    
T  41326042 tgtttgaaatagtttttgttttgagtttttgaaatatataaatcttcttctcacaatagttatccttttacatgttttagttttagtccc 41326131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 2362478 - 2362383
Alignment:
Q  290 taagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagttttagtc 380  Q
    |||| |||||||||||| | |||||||||||||||||| ||||||||||      ||||||||||||||||  |||||| | ||||||||||||||    
T  2362478 taagagtctgtttgaaacaatttttgttttcagtttttaaaatatacaaatcttcttctcacaatagttatcattttacttattttagttttagtc 2362383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 28089134 - 28089224
Alignment:
Q  298 tgtttgaaatagtttttgtttt-cagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||| | |||||||||| ||||||||||||||||||| |     ||| |||||||||||  |||||||||||||||||||||||||    
T  28089134 tgtttgaaacaatttttgtttttcagtttttgaaatatacaaatcatcttcttacaatagttatcattttacatgttttagttttagtccc 28089224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 877 - 927
Target Start/End: Original strand, 24468770 - 24468820
Alignment:
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  24468770 tgtttgatgatatttccggggcttgaatgccgaggaatgtccggttaattt 24468820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 877 - 927
Target Start/End: Original strand, 24473718 - 24473768
Alignment:
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  24473718 tgtttgatgatatttccggggcttgaatgccgaggaatgtccggttaattt 24473768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 35589494 - 35589412
Alignment:
Q  299 gtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagtttt 376  Q
    ||||||||||||||||||||||  |||||||||||||||||     || ||| ||||||||| |||||| || ||||||||||    
T  35589494 gtttgaaatagtttttgttttcgatttttgaaatatacaagtcctcttttcataatagttatccttttatatattttagtttt 35589412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 883 - 923
Target Start/End: Original strand, 14742475 - 14742515
Alignment:
Q  883 atgatatttccggagcttgcatgcctaggaatgtccgttta 923  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  14742475 atgatatttttggagcttgcatgcctaggaatgtccgttta 14742515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 31637707 - 31637744
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatata 335  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  31637707 tgtttgaaatagcttttgttttcagtttttaaaatata 31637744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 682 - 971
Target Start/End: Original strand, 1217139 - 1217428
Alignment:
Q  682 gcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaaggcaa 781  Q
    |||||||||||||||| |||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  1217139 gcaattttagtggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaa 1217238  T
Q  782 cagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttttgttt 881  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1217239 cagaagtgcagattggcttgctaatttcagcatttcgacggattttttagattttcatattctggagactcctcctagtgagcttcagagtcttttgttt 1217338  T
Q  882 gatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttcctttgggctctgagagccctcttttgtacc 971  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1217339 gatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctctgagagccctcttttgtacc 1217428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 677 - 971
Target Start/End: Original strand, 1369409 - 1369703
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    |||||||||||||||| |||| |||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  1369409 aaattgcaattttagtagaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaa 1369508  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  1369509 ggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattcttgagactcctcctagtgagcttcagagtcttt 1369608  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttcctttgggctctgagagccctcttttgtacc 971  Q
    |||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1369609 tgtttgatgatatttccggaacttgcatgcctaggaacgtccatttaatttcttagttttctttcctttgggctctgagagccctcttttgtacc 1369703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 677 - 950
Target Start/End: Complemental strand, 28945500 - 28945227
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||||||||| |||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  28945500 aaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaa 28945401  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||    
T  28945400 ggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttttagattttcatattctagagactcctcctagtgagcttcaaagtcttt 28945301  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttcctttgggct 950  Q
    ||||||||||||||| |||  ||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  28945300 tgtttgatgatattttcgggacttacatgcctaggaacgtccgtttaatttcttagttttctttcctttaggct 28945227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 677 - 940
Target Start/End: Original strand, 44307499 - 44307762
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||||||||| |||||||| |||||| | | |||| || ||||||||||||||||||||| ||||||||||||| |||||||||  |||    
T  44307499 aaattgcaattttagtggaacgactcctactttggtcgggcgtattcgacaacttttgagtttgagttggattgtcaaaattacccatacttggcgtgaa 44307598  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  44307599 ggcaacagaagtgcagattggcttgctaatttcagcatttcgatggattttctagattttcatattctggagactccccctagtgagcttcagagtcttt 44307698  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttcttt 940  Q
    || |||||||||||  ||| ||||||||||||||||| || |||||||||| ||||||||||||    
T  44307699 tggttgatgatattatcggggcttgcatgcctaggaacgttcgtttaatttcttagttttcttt 44307762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 677 - 971
Target Start/End: Complemental strand, 36858940 - 36858648
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||| ||||||| |||||||| |||||||  | |||| || |||||||||||||||||| ||| |||||||||||| ||||| |||| |||    
T  36858940 aaattgcaattttggtggaacgactcctaccttggtcaagcgtattcgacaacttttgagtttgagttagacggtcaaaattacccatactaggcatgaa 36858841  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    ||||||| ||||||| |||| |||||||||| ||||||||||| ||||| ||||||| ||||||||||||||| ||| |||||||||||||||| |||||    
T  36858840 ggcaacaaaagtgcaaattgacttactaattacagcatttcgatggattctctagatcttcatattctggagaatccccctagtgagcttcagagtcttt 36858741  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttc-ctttgggctctgagagccctcttttgtacc 971  Q
    |||||||||||||||||||  ||||||||| |||||| |||| |||||||| ||||||||||||| |||||| || ||   |||||||||||||||    
T  36858740 tgtttgatgatatttccgggacttgcatgcgtaggaacgtccttttaatttcttagttttctttctctttggcctttg---gccctcttttgtacc 36858648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 13567215 - 13567330
Alignment:
Q  10 gacatcagtgacgaaaatcaaaactcaacactcttagccaatagaacaccaaaatcacactttaaagagaagaaaaaggggagaaatacatctacaatga 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13567215 gacatcagtgacgaaaatcaaaactcaacactcttagccaacagaacaccaaaatcacactttaaagagaagaaaaaggggagaaatacatc-acaatga 13567313  T
Q  110 caatgggttatgtgcat 126  Q
    |||| ||||||||||||    
T  13567314 caataggttatgtgcat 13567330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 12701040 - 12701127
Alignment:
Q  299 gtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    |||||||||||||||||||||||||||||||||||||||||     |||| |||||||||||||||||||||||||||||||||||||    
T  12701040 gtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttcttacaatagttattcttttacatgttttagttttagtcc 12701127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 21555382 - 21555470
Alignment:
Q  299 gtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||| ||||     ||||||||||||||| ||||||||||||||||||||||||||    
T  21555382 gtttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctcacaatagttatccttttacatgttttagttttagtccc 21555470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 36609503 - 36609412
Alignment:
Q  297 ctgtttgaaatagtttttgtttt-cagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |     ||||||||||||||| ||||||||||||||||||||||||||    
T  36609503 ctgtttgaaatagtttttgtttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttagtccc 36609412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 23249470 - 23249560
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||| | ||||||||||| ||||||||||||||||||     |||||||||||||||| ||||||||||||||||||||||||||    
T  23249470 ctgtttgaaacaatttttgttttcggtttttgaaatatacaagccctcttctcacaatagttatccttttacatgttttagttttagtccc 23249560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 35929707 - 35929797
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||||| |||     ||||||||||||||||  ||||| |||||||||||||||||||    
T  35929707 ctgtttgaaatagtttttgttttcagtttttgaaatatataagtcctcttctcacaatagttatcattttatatgttttagttttagtccc 35929797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 56100226 - 56100144
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||     ||||| |||||||||| |||||||||||||||||||    
T  56100226 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgcaatagttatccttttacatgttttagttt 56100144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 295 - 382
Target Start/End: Original strand, 19598365 - 19598457
Alignment:
Q  295 gtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||||||||||||| ||||||||||||     |||||| ||||||| |  |||||||||||||||||||||||||    
T  19598365 gtctgtttgaaatagtttttgttttcagttttcgaaatatacaagtcattttctcaaaatagttttctttttacatgttttagttttagtccc 19598457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 763 - 927
Target Start/End: Original strand, 4228327 - 4228491
Alignment:
Q  763 atacttggcaggaaggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtga 862  Q
    |||||||||  ||||| || |||||||| ||||||||| ||||||| ||||||||   | ||| | |  ||||   |||| ||||||||||||||| |||    
T  4228327 atacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaattatttgaatttgattattttggagactcctcctattga 4228426  T
Q  863 gcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||||  || ||  ||||||||||||||||||| ||||||||||||| |||| |||| |||||||    
T  4228427 gcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaagaatatccggttaattt 4228491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 827840 - 827917
Alignment:
Q  308 agtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtc 380  Q
    ||||||||||||| |||||||||||||||||||     |||||||||||||||  |||||||||||||||||||||||    
T  827840 agtttttgttttcggtttttgaaatatacaagtcctcttctcacaatagttatctttttacatgttttagttttagtc 827917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 41842789 - 41842871
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagtttt 376  Q
    ||||||||||||||||||||||| |||||||||||||||||      |||||||||| |||| |||||||||||||||||||||    
T  41842789 tgtttgaaatagtttttgttttcggtttttgaaatatacaaatccttttctcacaattgtta-tcttttacatgttttagtttt 41842871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 53584654 - 53584612
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaagt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  53584654 tgtttgaaatagtttttgttttcagtttttgaaatatacaagt 53584612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 44243785 - 44243696
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||  ||||||||| |||||||||||||||||||     |||| ||||||||||| |||||| |||||||| |||||||||    
T  44243785 ctgtttgaaataaattttgtttttagtttttgaaatatacaagtcatcttcttacaatagttatccttttatatgttttaattttagtcc 44243696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 322 - 381
Target Start/End: Original strand, 27733401 - 27733465
Alignment:
Q  322 gtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||     |||||||||||||||| |||||||||||||||||||||||||    
T  27733401 gtttttgaaatatacaagacctcttctcacaatagttatccttttacatgttttagttttagtcc 27733465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 839 - 927
Target Start/End: Complemental strand, 47597557 - 47597469
Alignment:
Q  839 tattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||| ||||||||||||||| ||||||||  || ||  |||||||| |||||||||  ||||||||||||| ||||||||| |||||||    
T  47597557 tattttggagactcctcctattgagcttcgaaagctgatgtttgattatatttccgaggcttgcatgcctaagaatgtccggttaattt 47597469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 35749385 - 35749473
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtc 380  Q
    |||||||||||| ||||| |||||| |||||||||||||||||     |||||| |||| ||||  ||||| |||||||||||||||||    
T  35749385 ctgtttgaaataatttttattttcaatttttgaaatatacaagtcatcttctcataataattatctttttatatgttttagttttagtc 35749473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 786 - 940
Target Start/End: Complemental strand, 44073062 - 44072917
Alignment:
Q  786 agtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatg 885  Q
    ||||||||||||||| ||||||||| ||||||||         |||||||||||||| | ||||||| ||||| ||| ||||||| |||||||||| |||    
T  44073062 agtgcagattggcttgctaatttcaacatttcga---------tagattttcatattttagagactcttcctaatgaacttcagagtcttttgtttaatg 44072972  T
Q  886 atatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttcttt 940  Q
     |||||  |||| ||| ||||| | |||  | | |||||||| |||| |||||||    
T  44072971 ctatttttggagtttggatgcccaagaacattcatttaatttgttagctttcttt 44072917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 53583511 - 53583470
Alignment:
Q  341 tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  53583511 tctcacaatagtaatccttttacatgttttagttttagtccc 53583470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 877 - 914
Target Start/End: Complemental strand, 15828349 - 15828312
Alignment:
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaat 914  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  15828349 tgtttgatgatatttctggagcgtgcatgcctaggaat 15828312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 916
Target Start/End: Complemental strand, 36894343 - 36894306
Alignment:
Q  879 tttgatgatatttccggagcttgcatgcctaggaatgt 916  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  36894343 tttgatgatttatccggagcttgcatgcctaggaatgt 36894306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 912
Target Start/End: Original strand, 50084499 - 50084532
Alignment:
Q  879 tttgatgatatttccggagcttgcatgcctagga 912  Q
    ||||||||||||||||||||||||||| ||||||    
T  50084499 tttgatgatatttccggagcttgcatgtctagga 50084532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 677 - 950
Target Start/End: Original strand, 33373173 - 33373446
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    |||||||||||||||||||||||||||||| ||||| || | |||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  33373173 aaattgcaattttagtggaacaactcctactttggttaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaa 33373272  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33373273 ggcaacaaaagtgcagattggattgctaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagagtcttt 33373372  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttcctttgggct 950  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  33373373 tgtttgatgatatttccggagcttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 33373446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 677 - 940
Target Start/End: Original strand, 45093416 - 45093679
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||||||||| |||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||| |||||||||  |||    
T  45093416 aaattgcaattttagtggaacgactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgtgaa 45093515  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  45093516 ggcaacagaagtgcagattggcttgcaaatttcagcatttcgatggattttctagattttcatattctgaagactccccctagtgagcttcagagtcttt 45093615  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttcttt 940  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||    
T  45093616 tgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttttcttt 45093679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 677 - 940
Target Start/End: Original strand, 42000250 - 42000513
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    |||||||||||||||||||||  ||||||| |||||||| | |||| || ||||||||||||||||||||||||||||||||||| |||||||||  |||    
T  42000250 aaattgcaattttagtggaacggctcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgtgaa 42000349  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||| | |||||    
T  42000350 ggcaacaaaagtgcagattggcttgctaatttcagcatttcgatggaatttctagattttcatattctggagactctccctagtgagcttcaaagtcttt 42000449  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttcttt 940  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||||    
T  42000450 tgtttgatgatatttccggggcttgcatgcataggaatgttcgtttaatttcttagttttcttt 42000513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 680 - 941
Target Start/End: Original strand, 35808180 - 35808441
Alignment:
Q  680 ttgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaaggc 779  Q
    |||||||||| ||||||| |||||||| |||||||  | |||| || | |||||||||||||||||||| |||||||||||| |||||||||  ||||||    
T  35808180 ttgcaattttggtggaacgactcctaccttggtcaagcgtattcgacagcttttgagtttgagttggacggtcaaaattacccatacttggcgtgaaggc 35808279  T
Q  780 aacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttttgt 879  Q
    ||||||||||||||||||||| |||||| || |||||||| ||||| ||||||| |||||||| |||||| ||| |||||||||||||||| ||||||||    
T  35808280 aacagaagtgcagattggcttgctaattacaacatttcgatggattctctagatcttcatattatggagaatccccctagtgagcttcagagtcttttgt 35808379  T
Q  880 ttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttc 941  Q
    ||||| |||||||||| ||||||||||||||||| |||| |||||||| |||||||||||||    
T  35808380 ttgattatatttccggggcttgcatgcctaggaacgtccttttaatttcttagttttctttc 35808441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 677 - 941
Target Start/End: Original strand, 9216198 - 9216463
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    ||||||||||||||||||||| |||||||| |||||||||  ||||||| | ||||||||||||||||||| ||||||||||||  |||||||    |||    
T  9216198 aaattgcaattttagtggaacgactcctactttggtcagatgtatttgaaagcttttgagtttgagttggaatgtcaaaattacgcatacttgatgtgaa 9216297  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattct-ggagactcctcctagtgagcttcagaatctt 875  Q
    ||||||| ||||||| |||||||| |||||||||||| ||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||| | ||    
T  9216298 ggcaacaaaagtgcaaattggcttcctaatttcagcacttcgatggattttttagattttcatattcttggagactccccctagtgagcttcagagtttt 9216397  T
Q  876 ttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttc 941  Q
    ||||||| |||||||| |||  ||| ||||| |||||| |||||||||||||||||||||||||||    
T  9216398 ttgtttgttgatattttcgggacttacatgcataggaacgtccgtttaatttattagttttctttc 9216463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 831 - 940
Target Start/End: Complemental strand, 31512378 - 31512268
Alignment:
Q  831 gattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgata-tttccggagcttgcatgcctaggaatgtccgtttaatttat 929  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||| |||||||| |||| ||| ||||||||||||| |    
T  31512378 gattttcatattctgaagactccccctagtgagcttcagaatcttttgtttgatgatatttttcggggcttgcatacctaagaacgtccgtttaatttct 31512279  T
Q  930 tagttttcttt 940  Q
    || ||||||||    
T  31512278 taattttcttt 31512268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 677 - 927
Target Start/End: Complemental strand, 14343075 - 14342826
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    |||||||||||||||||| |||||||||||  || |    | |||| || ||||||||| |||||| | ||| | ||||||||   |||||||||  |||    
T  14343075 aaattgcaattttagtgggacaactcctactctgattttgcgtattcgaaaacttttgaatttgagctagacagacaaaattattcatacttggcgtgaa 14342976  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
     |||||| ||| |||| ||| |||  |||||||| |||||| | | ||||||||||||||||||||||| ||||||  |||| ||||||||||| || ||    
T  14342975 tgcaacataagcgcagtttgacttggtaatttcaacatttcaatgaattttctagattttcatattctgaagactctccctaatgagcttcagagtc-tt 14342877  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    ||||||||||||||| |||  |||||||| ||| ||| |||  ||||||||    
T  14342876 tgtttgatgatattttcgggacttgcatgtctaagaacgtctctttaattt 14342826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 4623939 - 4623850
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||||||||||||||||||||||| |||     |||||||||||||||| |||||||||||||||||||||||||    
T  4623939 ctgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcacaatagttatccttttacatgttttagttttagtcc 4623850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 30204734 - 30204649
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtc 380  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||||||||||||||||||    
T  30204734 tttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagtc 30204649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 16655978 - 16656067
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||||||||||||||| |||||||||||     ||||||||||||||||  ||||||||||||||||||||||||    
T  16655978 ctgtttgaaatagtttttgttttcagtttttaaaatatacaagccttcttctcacaatagttatcattttacatgttttagttttagtcc 16656067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 23403601 - 23403682
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagtttt 376  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||||||||||||||    
T  23403601 tttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagtttt 23403682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 295 - 382
Target Start/End: Original strand, 21567705 - 21567797
Alignment:
Q  295 gtctgtttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||||||||||||||||| |||||||||||      |||| |||||||||||  |||||||||||||||||||||||||    
T  21567705 gtctgtttgaaatagtttttgttttcagttttagaaatatacaaatcctcttcttacaatagttatctttttacatgttttagttttagtccc 21567797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 36470222 - 36470134
Alignment:
Q  300 tttgaaatagtttttgtttt-cagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||| |||||||||| |||||||||||||||||||||     ||||||||||||||| ||||||||||||||||||||||||||    
T  36470222 tttgaaataatttttgtttttcagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagtccc 36470134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 286 - 376
Target Start/End: Complemental strand, 3001477 - 3001382
Alignment:
Q  286 ataataagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagtttt 376  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||     |||||||||| |||||  |||||||||||||||||||    
T  3001477 ataattaggatctgtttgaaatagtttttattttcagtttttgaaatatacaagtcctcttctcacaatggttatctttttacatgttttagtttt 3001382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 300 - 382
Target Start/End: Original strand, 39436844 - 39436931
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||| |||||||||||| ||||||||||||||||||     |||||||||||||||| ||||| |||||||||||||||||||    
T  39436844 tttgaaataatttttgttttcaatttttgaaatatacaagtcctcttctcacaatagttatttttttatatgttttagttttagtccc 39436931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 23275613 - 23275532
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaagttctc-----acaatagttattcttttacatgttttagtttt 376  Q
    ||||||||||||||||||||||||||||||||||||||||| |||     ||  ||||||||||||||||||||||||||||    
T  23275613 tttgaaatagtttttgttttcagtttttgaaatatacaagtcctctttttacggtagttattcttttacatgttttagtttt 23275532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 37630002 - 37630091
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||||||||||||||| ||||||| |||     ||||| |||||||||  |||||||||||||||||||||||||    
T  37630002 ctgtttgaaatagtttttgttttcagttttttaaatatataagccctcttctcgcaatagttagccttttacatgttttagttttagtcc 37630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 4234178 - 4234266
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtc 380  Q
    |||||| ||||||||||||||||||||||||||||||||||||     ||||| |||||||||  ||||||||||||||||||| ||||    
T  4234178 ctgtttaaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcgcaatagttagccttttacatgttttagtttgagtc 4234266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 22798541 - 22798613
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttaca 364  Q
    |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||    
T  22798541 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttaca 22798613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 14842309 - 14842398
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||| ||||||||||||||||||||||||||||||     || |||||||||||||  |||||||| ||||||||||| ||||    
T  14842309 tgtttgaaataatttttgttttcagtttttgaaatatacaagtcctcttttcacaatagttatcattttacatattttagttttaatccc 14842398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 36046614 - 36046528
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||| ||||||||||||||||||| |     | ||||||||||||| ||||||||||||||||||||| ||||    
T  36046614 tttgaaatagtttttgttt-cagtttttgaaatatacaaatctccttttcacaatagttatccttttacatgttttagttttaatccc 36046528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 41787497 - 41787584
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctc-----acaatagttattcttttacatgttttagttttagtc 380  Q
    ||||| |||||||||||||||||||||||| ||||||| || |||||     |||||||||||  |||||||||||||||||||||||    
T  41787497 tgtttaaaatagtttttgttttcagtttttaaaatatataaattctcttcttacaatagttatctttttacatgttttagttttagtc 41787584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 4414225 - 4414267
Alignment:
Q  296 tctgtttgaaatagtttttgttttcagtttttgaaatatacaa 338  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4414225 tctgtttgaaatagtttttgttttcagtttttgaaatatacaa 4414267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 29958596 - 29958518
Alignment:
Q  304 aaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagtttta 377  Q
    ||||| ||||||||||||||||||||||||||||||     || | ||||||||||| |||||||||||||||||||||    
T  29958596 aaataatttttgttttcagtttttgaaatatacaagtcatcttattacaatagttatccttttacatgttttagtttta 29958518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 45310103 - 45310057
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctc 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  45310103 tgtttgaaatagtttttgttttcaatttttgaaatatacaagttctc 45310057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 839 - 927
Target Start/End: Original strand, 44145936 - 44146024
Alignment:
Q  839 tattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||| ||||||||||||||| ||||||||  || ||  || |||||||||||| ||| |||||||||||||  |||||||| |||||||    
T  44145936 tattttggagactcctcctattgagcttcgaaagctcatggttgatgatattttcggggcttgcatgcctaaaaatgtccggttaattt 44146024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 844 - 921
Target Start/End: Original strand, 2077946 - 2078023
Alignment:
Q  844 tggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtt 921  Q
    ||||||||||||| || |||||||| ||| || | |||||||| |  |||||||||||||||||| ||||||| ||||    
T  2077946 tggagactcctccgagggagcttcaaaatattctatttgatgacaaatccggagcttgcatgcctcggaatgttcgtt 2078023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 2e-73; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 677 - 970
Target Start/End: Original strand, 37503064 - 37503355
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    |||||||||| || ||||||| |||||||| |||||||  | |||| || ||||||||||||||||||||| ||||||||||||| ||||||| |  |||    
T  37503064 aaattgcaatgttggtggaacgactcctaccttggtcaagcgtattcgacaacttttgagtttgagttggattgtcaaaattacccatacttgacgtgaa 37503163  T
Q  777 ggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtgagcttcagaatcttt 876  Q
    |||||||||||||||||||| ||| ||||||| |||||||||| ||||| |||||||||||||||||| |||| ||| |||||||||||||||| || |     
T  37503164 ggcaacagaagtgcagattgacttgctaattttagcatttcgatggattctctagattttcatattctagagaatccccctagtgagcttcagagtcctg 37503263  T
Q  877 tgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagttttctttc-ctttgggctctgagagccctcttttgtac 970  Q
    ||||||||||||||| |||| |||||||| |||| || ||||||||||| | ||||||||||||| ||||||||| ||   ||||||||||||||    
T  37503264 tgtttgatgatattttcggaacttgcatgtctagaaacgtccgtttaatcttttagttttctttctctttgggctttg---gccctcttttgtac 37503355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 737 - 918
Target Start/End: Original strand, 25905846 - 25906027
Alignment:
Q  737 tttgagttggactgtcaaaattacctatacttggcaggaaggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttctagatttt 836  Q
    ||||||||||||||||||||||||  ||||||||   ||||||||||||||||||||||| ||| |||||||||||||||| | |||||||||||||||     
T  25905846 tttgagttggactgtcaaaattactcatacttggtgtgaaggcaacagaagtgcagattgacttgctaatttcagcatttcaatggattttctagattta 25905945  T
Q  837 catattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtcc 918  Q
    |||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||    
T  25905946 catattcttgagactccccctagtgagcttcagagtcttttgtttgatgatatttccggggtttgcatgcctaggaacgtcc 25906027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 683 - 936
Target Start/End: Original strand, 1182469 - 1182738
Alignment:
Q  683 caattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaaggcaac 782  Q
    ||||||||||||||| |||||||| || ||||  | |||  || | ||||||||||||||||||||| ||||||||||| |||||||||  |||||||||    
T  1182469 caattttagtggaacgactcctacttttgtcaagcgtatccgaaatcttttgagtttgagttggactatcaaaattaccaatacttggcgtgaaggcaac 1182568  T
Q  783 agaagtgcagattggcttactaatttcagcatttc----------------gacggattttctagattttcatattctggagactcctcctagtgagctt 866  Q
    | ||||||| |||| ||| ||||||||||||||||                |  ||||||| ||||| |||||||| ||||||||||  |||||||||||    
T  1182569 ataagtgcatattgacttgctaatttcagcatttcggagtcttttgtttgagttggattttatagatattcatattttggagactccctctagtgagctt 1182668  T
Q  867 cagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagtttt 936  Q
    | || | ||||||||||||||||||  || ||||||||||||| ||| |||| |||||||| ||| ||||    
T  1182669 ctgagtattttgtttgatgatatttttggggcttgcatgcctaagaacgtccatttaatttcttactttt 1182738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 741 - 927
Target Start/End: Complemental strand, 3461650 - 3461463
Alignment:
Q  741 agttggactgtcaaaattacctatacttggcaggaaggcaacagaagtgcagattggctta-ctaatttcagcatttcgacggattttctagattttcat 839  Q
    |||||||| || ||||||||  ||| |||||| |||||| ||| ||||||| ||||||||  ||||||| ||||| || |  ||||||||||||||||||    
T  3461650 agttggaccgttaaaattactcatatttggcatgaaggctacaaaagtgcatattggctttgctaatttgagcatatcaatagattttctagattttcat 3461551  T
Q  840 attctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||||||||| ||| |||| ||| ||||||| ||||||||||||||||||||  |  ||||||||||||||||| |  ||||||||||    
T  3461550 attctggagaatccccctaatgaacttcagagtcttttgtttgatgatatttttgaggcttgcatgcctaggaacgagcgtttaattt 3461463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 729 - 940
Target Start/End: Complemental strand, 30775787 - 30775576
Alignment:
Q  729 cttttgagtttgagttggactgtcaaaattacctatacttggcaggaaggcaacagaagtgcagattggcttactaatttcagcatttcgacggattttc 828  Q
    ||||||||||| ||| |||| |||||||||||| ||  |||||  ||| |||||| || | ||| ||| ||| ||||||| ||||||| || |||||||     
T  30775787 cttttgagtttaagtcggacggtcaaaattacccatt-ttggcgtgaaagcaacataaatccaggttgacttgctaatttaagcattttgatggattttt 30775689  T
Q  829 tagattttcatattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttc-cggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||||||||||||  || ||||||||| |||||| ||||| | |||||||||||| | ||||||  |||||||| ||| |||||||  ||||||||||||    
T  30775688 tagattttcatatcatgtagactcctcttagtgaacttcaaagtcttttgtttgacggtatttctaggagcttgtatgtctaggaacatccgtttaattt 30775589  T
Q  928 attagttttcttt 940  Q
     ||||||||||||    
T  30775588 cttagttttcttt 30775576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 36404308 - 36404221
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||||||||||||||||||||    
T  36404308 tttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagtccc 36404221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 295 - 381
Target Start/End: Original strand, 45602982 - 45603073
Alignment:
Q  295 gtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||| |||||||||||||||||||||||||    
T  45602982 gtctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttatcacaatagttatccttttacatgttttagttttagtcc 45603073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 39391958 - 39392047
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||| ||||||||||||||||||||||||||    
T  39391958 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttttcttttcacaatagttatccttttacatgttttagttttagtccc 39392047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 839 - 927
Target Start/End: Original strand, 46428788 - 46428876
Alignment:
Q  839 tattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||| ||||||||||||||| ||||||||  || ||  ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  46428788 tattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccgaggcttgcatgcctaggaatgtccgtttaattt 46428876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 14201717 - 14201798
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatata---caagttctcacaatagttattcttttacatgttttagttt 375  Q
    |||||||||||||||||||||||||||||||||||||||   |   || |||||||||||||||||||||||||||||||||    
T  14201717 ctgtttgaaatagtttttgttttcagtttttgaaatataagtcctcttttcacaatagttattcttttacatgttttagttt 14201798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 35534482 - 35534569
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagt 379  Q
    |||||| ||||||||||||||||||||||||||||||||||||     ||||||||||||||||  ||||| ||||||||||||||||    
T  35534482 ctgtttaaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcacaatagttatcattttatatgttttagttttagt 35534569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 29360482 - 29360572
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||| | ||||| |||||||||||||||||||||||||     ||||||| ||||||| ||||||||||||||||||||||||||    
T  29360482 ctgtttgaaacaatttttcttttcagtttttgaaatatacaagtcctcttctcacagtagttatccttttacatgttttagttttagtccc 29360572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 37115976 - 37115887
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||||||||||||||||||||||| |||     ||||| ||||||||||  ||||| ||||||||||||||||||    
T  37115976 ctgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcgcaatagttatcattttatatgttttagttttagtcc 37115887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 855 - 913
Target Start/End: Complemental strand, 43329122 - 43329064
Alignment:
Q  855 cctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaa 913  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  43329122 cctagtgagcttcagagtcttttgtttgatgatatttttggagcttgcatgcctaggaa 43329064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 46487270 - 46487359
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||||||||||| |||||||||||||||||||| ||||     |||||||||||||||  ||||| |||||||||||||||||||    
T  46487270 ctgtttgaaatagttttt-ttttcagtttttgaaatatataagtcttcttctcacaatagttatcattttatatgttttagttttagtccc 46487359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 845 - 927
Target Start/End: Complemental strand, 54812209 - 54812127
Alignment:
Q  845 ggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||||||||||||| ||||||||  || ||  ||||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  54812209 ggagactcctcctattgagcttcgaaagctcatgtttgatgatatttcccgggcttgcatgcctaggaatgtccggttaattt 54812127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 309 - 376
Target Start/End: Complemental strand, 16353566 - 16353494
Alignment:
Q  309 gtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagtttt 376  Q
    |||||||||||||||||||||||||||||||     || ||||||||||||| ||||||||||||||||||||    
T  16353566 gtttttgttttcagtttttgaaatatacaagtcctcttttcacaatagttatccttttacatgttttagtttt 16353494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 839 - 927
Target Start/End: Original strand, 42794718 - 42794806
Alignment:
Q  839 tattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||| ||||||||||||||| ||||||||  || ||  ||||||||||||||||||| ||||||| |||||||||||| || |||||||    
T  42794718 tattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcacgcctaggaatgtgcggttaattt 42794806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 677 - 862
Target Start/End: Complemental strand, 41420608 - 41420422
Alignment:
Q  677 aaattgcaattttagtggaacaactcctacgttggtcagacatatttgataacttttgagtttgagttggactgtcaaaattacctatacttggcaggaa 776  Q
    |||||||||||||||||   ||||| |||| ||||| || ||||||||| | ||||||||||||| |||||  |||||| ||| | |||| |||   |||    
T  41420608 aaattgcaattttagtgagtcaacttctactttggttagccatatttgaaagcttttgagtttgaattggatagtcaaagttatccatacctggtgtgaa 41420509  T
Q  777 ggcaacagaagtgcagattggcttactaa-tttcagcatttcgacggattttctagattttcatattctggagactcctcctagtga 862  Q
    | ||||| || || | | |||||| |||| ||||| |||||||| | |||||||||||| || |||| | |||||||| ||||||||    
T  41420508 gacaacaaaaatggatactggcttgctaattttcatcatttcgatgaattttctagattctcgtatttttgagactccccctagtga 41420422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 52742352 - 52742437
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagttc-----tcacaatagttattcttttacatgttttagtttta 377  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||     || ||||||||||  |||||||| |||||||||||    
T  52742352 ctgtttgaaatagtttttgtttccagtttttgaaatatacaaattctcttatcgcaatagttatcattttacatattttagtttta 52742437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 3618415 - 3618339
Alignment:
Q  311 ttttgttttcagtttttgaaatatacaagtt-----ctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||| |||||||||||||||     ||||||||| ||||  |||||||||||||||||||||||||    
T  3618415 ttttgttttcagtttctgaaatatacaagttttcttctcacaatatttatctttttacatgttttagttttagtccc 3618339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 382
Target Start/End: Complemental strand, 48944196 - 48944104
Alignment:
Q  295 gtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||| ||||||||||||||| |||| || ||||||||||||||||     |||| |||||||||||  ||||||||||||| |||||||||||    
T  48944196 gtctctttgaaatagtttttctttttagcttttgaaatatacaagtcctcttcttacaatagttatcattttacatgtttttgttttagtccc 48944104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 47599412 - 47599452
Alignment:
Q  340 ttctcacaatagttattcttttacatgttttagttttagtc 380  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  47599412 ttctcacaatagttatccttttacatgttttagttttagtc 47599452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 54883065 - 54882991
Alignment:
Q  313 ttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||| |||||||||||||| ||||     |||||||||| |||| ||||||| ||||||||||||||||||    
T  54883065 ttgttttcggtttttgaaatatagaagtcctcttctcacaatatttatccttttacgtgttttagttttagtccc 54882991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 874 - 927
Target Start/End: Original strand, 36275929 - 36275982
Alignment:
Q  874 ttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    ||||||| || ||||||||||||| |||||||| ||||||||| ||||||||||    
T  36275929 ttttgttcgaggatatttccggagtttgcatgcttaggaatgttcgtttaattt 36275982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 844 - 927
Target Start/End: Complemental strand, 43912214 - 43912131
Alignment:
Q  844 tggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    ||||||||||  ||| ||||||||| || ||   |||||||||||||||||| | ||||||||||| ||||||||  |||||||    
T  43912214 tggagactccagctactgagcttcaaaacctcacgtttgatgatatttccggggtttgcatgcctaagaatgtccagttaattt 43912131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1079 - 1113
Target Start/End: Original strand, 14783732 - 14783766
Alignment:
Q  1079 ataggcttaaatattgcatttgtccctgcaaatat 1113  Q
    |||||||||||||||||| ||||||||||||||||    
T  14783732 ataggcttaaatattgcacttgtccctgcaaatat 14783766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 70; Significance: 5e-31; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 290 - 382
Target Start/End: Complemental strand, 13152 - 13055
Alignment:
Q  290 taagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||||||||||||||||||||    
T  13152 taagggcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagtccc 13055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 70; Significance: 5e-31; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 290 - 382
Target Start/End: Original strand, 22175 - 22272
Alignment:
Q  290 taagggtctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||||||||||||||||||||    
T  22175 taagggcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagtccc 22272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 5e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 2814976 - 2814889
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||  |||||||||||||||||||||||||    
T  2814976 tttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatcattttacatgttttagttttagtccc 2814889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 444522 - 444611
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||| ||||||||||||||||||||||||||||||||||||     |||||||||||||||| || |||||||||||||||||||||||    
T  444522 tgtttaaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatcctattacatgttttagttttagtccc 444611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 839 - 927
Target Start/End: Complemental strand, 1222947 - 1222859
Alignment:
Q  839 tattctggagactcctcctagtgagcttcagaatcttttgtttgatgatatttccggagcttgcatgcctaggaatgtccgtttaattt 927  Q
    |||| ||||||||||||||| ||||||||  || ||  ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  1222947 tattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaattt 1222859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 6200251 - 6200163
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagttttagtc 380  Q
    |||||||||||| |||||||||||||||||||||||||||||      |||||||||||||||| ||||||||| ||||||||||||||    
T  6200251 ctgtttgaaatattttttgttttcagtttttgaaatatacaaattctcttctcacaatagttatccttttacatattttagttttagtc 6200163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 1067801 - 1067891
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattc-ttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||  | ||||| |||||||||||||||||||    
T  1067801 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttaccctttttatatgttttagttttagtccc 1067891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 24640438 - 24640351
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||| ||||     |||||| ||||||||| ||| || |||||||||||||||||||    
T  24640438 tttgaaatagtttttgttttcagtttttgaaatatgcaagtcctcttctcataatagttatccttctatatgttttagttttagtccc 24640351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 23774066 - 23774159
Alignment:
Q  294 ggtctgtttgaaatagtttttgttttcagtttttgaaatatacaagttctc-----acaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||| |||| | ||||||||||||||||||||||     | ||||||||| |||||| |||||||||||||| ||||    
T  23774066 ggtctgtttgaaatagtttttatttttaatttttgaaatatacaagttctcttctcataatagttatccttttatatgttttagttttaatccc 23774159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 26394075 - 26393989
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaa-----gttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    |||||||||||||||||||||||||||||||||||| ||      ||||| ||||| ||||  ||||||||||||||||||||||||    
T  26394075 tttgaaatagtttttgttttcagtttttgaaatataaaaatcttcttctcgcaatatttatcattttacatgttttagttttagtcc 26393989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 12324172 - 12324214
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag 339  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  12324172 ctgtttgaagtagtttttgttttcagtttttgaaatatacaag 12324214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 879 - 936
Target Start/End: Complemental strand, 20679066 - 20679009
Alignment:
Q  879 tttgatgatatttccggagcttgcatgcctaggaatgtccgtttaatttattagtttt 936  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| ||  ||||||||    
T  20679066 tttgatgatatttccggggcttgcatgcctaggaatgttcgtttagttgtttagtttt 20679009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 380
Target Start/End: Original strand, 34710135 - 34710199
Alignment:
Q  321 agtttttgaaatatacaagttctc-----acaatagttattcttttacatgttttagttttagtc 380  Q
    ||||||||||||||||||||||||     ||| |||||||||||||| |||||||||||||||||    
T  34710135 agtttttgaaatatacaagttctcttctcacagtagttattcttttatatgttttagttttagtc 34710199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 4032368 - 4032326
Alignment:
Q  340 ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||  ||||| |||||||||||||||||||    
T  4032368 ttctcacaatagttatctttttatatgttttagttttagtccc 4032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 58; Significance: 8e-24; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 18592 - 18503
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||     ||||||||||||||| |||||||||||||||||||||||||    
T  18592 ctgtttgaaatagtttttggttttagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagtcc 18503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 55; Significance: 5e-22; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 21476 - 21566
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagt-----tctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    |||||||||| |||||||||||||||||||||||||||| || |     |||||||||||||||| |||||||||||||||||||||||||    
T  21476 ctgtttgaaacagtttttgttttcagtttttgaaatatataaatcatcttctcacaatagttattattttacatgttttagttttagtccc 21566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 970 - 1057
Alignment:
Q  299 gtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||||||||||||| |||||||||||     |||||  |||||||||||||||| ||||||||||||||||||    
T  970 gtttgaaatagtttttgttttcagtttttaaaatatacaagtctttttctcgtaatagttattcttttatatgttttagttttagtcc 1057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 1343 - 1256
Alignment:
Q  299 gtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtcc 381  Q
    ||||||||||||||||||||||||||||| |||||||||||     |||||  |||||||||||||||| ||||||||||||||||||    
T  1343 gtttgaaatagtttttgttttcagtttttaaaatatacaagtctttttctcgtaatagttattcttttatatgttttagttttagtcc 1256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 67872 - 67959
Alignment:
Q  297 ctgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagt 379  Q
    |||||||||||| |||||||||||||||||| |||||||||||     |||| ||||||||||| |||||||||||||||||||||||    
T  67872 ctgtttgaaataatttttgttttcagtttttaaaatatacaagtcctcttctaacaatagttatccttttacatgttttagttttagt 67959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 11320 - 11409
Alignment:
Q  298 tgtttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||     |||||| | ||||||| |||| ||||||||| |||||||||||    
T  11320 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcagagtagttatcctttaacatgtttttgttttagtccc 11409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 37489 - 37402
Alignment:
Q  300 tttgaaatagtttttgttttcagtttttgaaatatacaag-----ttctcacaatagttattcttttacatgttttagttttagtccc 382  Q
    ||||||||||| ||||||||| ||||||||||||||||||     ||||| ||||||||||  |||||||| ||||||||||||||||    
T  37489 tttgaaatagtgtttgttttcggtttttgaaatatacaagtcctcttctcgcaatagttatcattttacatattttagttttagtccc 37402  T

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