View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7266_low_2 (Length: 1044)
Name: NF7266_low_2
Description: NF7266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7266_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 43103226 - 43103681
Alignment:
| Q |
1 |
aaagtgcactctgaggagaggagat-agacacacgaaacgaaactatgtgtatgttagtgagagtgaggaggattgcagaaggaggtcagtgtataaata |
99 |
Q |
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| T |
43103226 |
aaagtgcactctgaggagaggagaggagatagac-acacgaaactatgtgtatgttagtgagagtgaggaggattgcagaaggaggtcagtgtataaata |
43103324 |
T |
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| Q |
100 |
gagcaaatattgtaccgtggtccaaacctaagaagaagaaaaaagttttgacatggtgaacaagccctaaagttttaaggatctgtcaatttaatatctc |
199 |
Q |
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| T |
43103325 |
gagcaaatattgtaccgtggtccaaatctaagaagaagaaaaaagttttgacatggtaaacaagccctaaagttttaaggatctgtcaatttaatatctc |
43103424 |
T |
|
| Q |
200 |
aaactttttaaatagtaaattaattccttaaattaaagaatattcataaatttaacccatccataaaaccattttaaatagagattagagactaaattag |
299 |
Q |
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| T |
43103425 |
aaactttttaaatagtaaattaattccttaaattaaagaatattcataaatttaacccatccataaaaccattttaaatagagattagagactaaattag |
43103524 |
T |
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| Q |
300 |
cctttaactgcatcaaaaataaacatagaaatttaaaaattgtggtggaaagttagctaaattgatttatgtgttccaatttattggatcgaattgctat |
399 |
Q |
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| T |
43103525 |
cctttagctgcatc-aaaataaacatagaaatttaaaaattgtggtggaaagttagctaaattgattgatgtgttccaatttattggattgaattgctat |
43103623 |
T |
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| Q |
400 |
tttgtaaacatgagggattaaattaatggactcttacaatttcaatatttaaaatgca |
457 |
Q |
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| T |
43103624 |
tttgtaaacatgagggattaaattaatggactcttacaatttcaatatttaaaatgca |
43103681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 765 - 1034
Target Start/End: Original strand, 43103956 - 43104225
Alignment:
| Q |
765 |
tgtaatggactataagttttgaccacaacttatgccaaaggaacnnnnnnnnggccaaacaaacatgcaaacaatcattttggtgattgaataggtgata |
864 |
Q |
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| T |
43103956 |
tgtaatggactataagttttgaccacaacttatgccaaaggaacaaaaaaaaggccaaacaaacatgcaaacaatcattttggtgattgaataggtgata |
43104055 |
T |
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| Q |
865 |
agttgttattacttaccattatctttggatatgattgcaatttcaatacatttaaagattaaagtgacattgtttcacacatccaaaactaaaatggatg |
964 |
Q |
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| T |
43104056 |
agttgttatcacttaccattatctttggatatgattgcaatttcaatacatttaaagattaaagtgacattgtttcacacatccaaaactaaaatggatg |
43104155 |
T |
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| Q |
965 |
tctgcttgataaacaaccataatctcatccatattcattttgtatatgagttctgtatatatgatgtcca |
1034 |
Q |
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| T |
43104156 |
tctgcttgataaacaaccataatctcatccatattcatttggcatataagtgctgtatatatgatgtcca |
43104225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 478 - 685
Target Start/End: Original strand, 43103671 - 43103878
Alignment:
| Q |
478 |
tttaaaatgcatattttaagattttaaaaatcggaccacaaagtgaataggtaagacatgcatgtgagtcatatttaactgattcggttgaaccggataa |
577 |
Q |
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| T |
43103671 |
tttaaaatgcatattttaagattttaaaaattggaccacaaagcaaataggtaagacatgcatgtgggtcatatttaactgattcggttgaaccggataa |
43103770 |
T |
|
| Q |
578 |
aaataaatatattgttttttaagggaaacaataaatacagcgttaattccttcaaaaataaatctagggttagtattataattaatatgcaagtaataat |
677 |
Q |
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| T |
43103771 |
aaataaatatattgttttttaagggaaacaataaatacagcgttaattccttcaaaaataaatctagggttagtattataattaatatgcaagtaataat |
43103870 |
T |
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| Q |
678 |
ttacaagc |
685 |
Q |
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|||||||| |
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| T |
43103871 |
ttacaagc |
43103878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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