View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7267_high_6 (Length: 319)
Name: NF7267_high_6
Description: NF7267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7267_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 20923741 - 20923446
Alignment:
| Q |
1 |
ttaagtcgggattttgacaacaattaaaccctaaaaagtgcaagaaactaacattactgataagaagnnnnnnnnnnctacatttgctagtatctacaca |
100 |
Q |
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| T |
20923741 |
ttaagtcgggattttgacaacaattaaaccctaaaaagtgcaagaaactaacattactgataagaagaaaaaaaaa-ctacatttgctagtatctacaca |
20923643 |
T |
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| Q |
101 |
aggtcattgagataccaggcaaaggaaaaaagggatcatttatttagcatcggagtcatgatttccaccttaatgtgttagctactcttcctcctcatca |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
20923642 |
aggtcattgagataccaggcaaagaaaaaaagggatcattcatttagcatctgagtcatgatttccaccttaaggtgttagctactcttcctcatcatca |
20923543 |
T |
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| Q |
201 |
taatctagcctattacctaggtttgctgcaagctgcaacgtgtcaatcatcattttgtcgacatcagaaaggaacaacctggaatttcttcatgttg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20923542 |
taatctagcctattacctaggtttgctgcaagctgcaacgtgtcaatcgtcatcttgtcgacatcagaaaggaataacctggaatttcttcatgttg |
20923446 |
T |
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Back To:
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Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 27 - 297
Target Start/End: Original strand, 3181511 - 3181799
Alignment:
| Q |
27 |
aaccctaaaaagtgcaagaaactaacattactgataagaagnnnnnnnnnn-ctacatttgctagtatctacacaaggtcattgagataccaggcaaagg |
125 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
3181511 |
aaccctaaaaagtgcatgaaactaacattactgataagaagaagaaaaaaaactacatttgttagtatctacacaaggtcattggtataccaggcaaaga |
3181610 |
T |
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| Q |
126 |
aaaaaaggg-atcatttatttagcatcggagtcatgatttccaccttaatgtgttagctactcttcctcctcatcata---------------atctagc |
209 |
Q |
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||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
3181611 |
aaaaaaggggatcattcatttagcatcggagacatgatttccaccttaaggtgttagctactcttcctcctcatcataatcttcctcatcctcatctagc |
3181710 |
T |
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| Q |
210 |
ctattacctaggtttgctgcaagctgcaacgtgtcaatcatcattttgtcgacatcagaaag-gaacaacctggaatttcttcatgttg |
297 |
Q |
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|||||||| || || ||||||||||||| ||||||||| ||| ||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
3181711 |
ctattaccaagattcgctgcaagctgcagtgtgtcaatcgccatcttgtcaacatcagaaagagaccaacctggaatttcttcatgttg |
3181799 |
T |
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