View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7267_low_1 (Length: 793)
Name: NF7267_low_1
Description: NF7267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7267_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 650; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 11 - 704
Target Start/End: Complemental strand, 46755445 - 46754752
Alignment:
| Q |
11 |
gtagcagagacatggactagttaaatgagtttcgttcacaatctcaaaagttagcttgtgagataaagtatccaaattcaatagtctattcttacgtctt |
110 |
Q |
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| T |
46755445 |
gtagcatagacatggactagttaaatgagtttcgttcacaatctcaaaagttagcttgtgagataaagtatccaaattcaatagtctattcttacgtctt |
46755346 |
T |
|
| Q |
111 |
gtgtgatttttgagtcaaattcttacattgtcatctttaatttagctttaatacaatgttaaatagactttaatttcattttcgaaagatagttcaaaag |
210 |
Q |
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| T |
46755345 |
gtgtgatttttgagtcaaattcttacattgtcatctttaatttagctttaatacaatgttaaatagactttaattttattttcaaaagatagttcaaaag |
46755246 |
T |
|
| Q |
211 |
attaggtggccacatattgtaaacacacacgcatccgagctcaaaaatcttagcaacgtgaaacatagttattagagttggttgaaattgaaatttatac |
310 |
Q |
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| T |
46755245 |
attaggtggccacatatagtacacacacacgcatccgagctaaaaaattatagcaacgtgacacatagttattagagttggttgaaattgaaatttatac |
46755146 |
T |
|
| Q |
311 |
accttttacgtatacacccttcaaatataatcatagttcaaaagaattagtaaactccatacttcactttcaactaaaccactctaaaaatttacatatg |
410 |
Q |
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| T |
46755145 |
accttttacgtatacacccttcaaatataatcatagttcaaaagaattagtaaactccatacttcactttcaactaaaccactctaaaaatttacatatg |
46755046 |
T |
|
| Q |
411 |
ccaaaagaaattagtctcacatcaatttgttgttgtacttggtgctctcccaaactcctcaacggttacaatttcaataccaactttcatttccgtttag |
510 |
Q |
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| T |
46755045 |
ccaaaagaaattagtctcacatcaatttgttgttgtacttggtgctctcccaaactcctcaacggttacaatttcaataccaactttcatttccgtttag |
46754946 |
T |
|
| Q |
511 |
agaataaatgcattgtttttactattttgataaggttatatatgtgtagttatcaacctaaaatatttgtcctaaccgtcaacctcatacagctatgccg |
610 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46754945 |
agaataaatgcattgtttttactattttgataaggttatatatgtatagttatcaacctaaaatatttgtcctaaccgtcaacctcatacagctatgccg |
46754846 |
T |
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| Q |
611 |
ggaaagattatcgatgttgtgtacacgaaaataaactgagaaaaaagaatggaaaattattgtagacaaccattggttacacaatcaaggggcc |
704 |
Q |
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| T |
46754845 |
ggaaagattatcgatgttgtgtacacgaaaataaactgagaaaaaagaatggaaaattgttgtagacaaccattggttacacaatcaaggggcc |
46754752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 746 - 793
Target Start/End: Complemental strand, 46754709 - 46754662
Alignment:
| Q |
746 |
tatacacaacatacacaagtcaaggcacctgtctagcaaattgttagc |
793 |
Q |
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| T |
46754709 |
tatacacaacatacacaagtcaaagcacctgtctagcaaattgttagc |
46754662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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