View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7267_low_4 (Length: 409)
Name: NF7267_low_4
Description: NF7267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7267_low_4 |
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| [»] chr4 (6 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 26191841 - 26192231
Alignment:
| Q |
19 |
catcactcaatactcaccagcatcattggtaagattgataaaacctttattatacaaatctagatagacaaactcatttcacatagtggctttgggatgg |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26191841 |
catcactcaacactcaccagcatcattggtaagattgataaaacctttattatacaaatctagatagacaaactcatttcacatagtggctttgggatgg |
26191940 |
T |
|
| Q |
119 |
ctacattgggatccacataagatggttcacagggaaaaagtgacacactggagaattcctcccagccttaatcccaagttgtttgaatataatatgatta |
218 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26191941 |
ctagattggaatccacataagatggttcacagggaaaaagtgacacactggagaattcttcccagccttaatcccaagttgtttgaatataatatgatta |
26192040 |
T |
|
| Q |
219 |
gggttccattcagatgtatcaaaatggcaaactccaagagcttctattttatctccattctgatcactaacaagtgagactttgaacactttaatctttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |
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| T |
26192041 |
gggttccattcagatgtatcaaaatggcaaactccaagagcttccattttatctccattctcatcactaacaagtgagaccttgaacactttagtctttg |
26192140 |
T |
|
| Q |
319 |
tggcaatgtaatggcaatagtaaatggcatatggatatgggaggggatgacaagctacccatttgggaacatcaatatcatgtgatacttc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26192141 |
tggcaatgtaatggcaatagtaaatggcatatggatatggaaggggatgacaagctacccatttgggaacatcaatatcatgtgatacttc |
26192231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 26179564 - 26179952
Alignment:
| Q |
19 |
catcactcaatactcaccagcatcattggtaagattgataaaacctttattatacaaatctagatagacaaactcatttcacatagtggctttgggatgg |
118 |
Q |
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||||||||| |||||| | ||||| | || ||||||||||| |||||||||||||| ||||||||||| |||||| ||||||| |||||||| | | || |
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| T |
26179564 |
catcactcatcactcacaaccatcactagtgagattgataaa-cctttattatacaagtctagatagaccaactcacttcacatggtggcttttgaa-gg |
26179661 |
T |
|
| Q |
119 |
ctacattgggatccacataagatggttcacagggaaaaagtgacacactggagaattcctcccagccttaatcccaagttgtttgaatataatatgatta |
218 |
Q |
| |
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| |||||| | ||||| ||||||||||||||| || ||||||||||||||||| ||| |||| |||||||| | ||| || | ||||| ||||||| |
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| T |
26179662 |
ttgcattggaacccacagaagatggttcacaggtaagaagtgacacactggagagttcttcccggccttaatgctaagctgcctaaatattatatgatct |
26179761 |
T |
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| Q |
219 |
gggttccattcagatgtatcaaaatggcaaactccaagagcttctattttatctccattctgatcactaacaagtgagactttgaacactttaatctttg |
318 |
Q |
| |
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|||||||| |||||||| || |||||||||| ||||| |||||| |||||||||||||||| ||||| ||||| ||||| ||||||||| || || || |
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| T |
26179762 |
gggttccaatcagatgtgtccaaatggcaaattccaacagcttccattttatctccattctcatcaccgacaagcgagaccttgaacactctagtccctg |
26179861 |
T |
|
| Q |
319 |
tggcaatgtaatggcaatagtaaatggcatatggatatgggaggggatgacaagctacccatttgggaacatcaatatcatgtgatacttc |
409 |
Q |
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| || |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
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| T |
26179862 |
tagctatgtaatgacaaaagtaaatggcatatggatatgagaggggatgacaagctacccattttggagcatcaatatcatgggatacttc |
26179952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 50 - 409
Target Start/End: Original strand, 26161798 - 26162155
Alignment:
| Q |
50 |
agattgataaaacctttattatacaaatctagatagacaaactcatttcacatagtggctttgggatggctacattgggatccacataagatggttcaca |
149 |
Q |
| |
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||||||||||| |||||||||||||| | ||||||||| |||||| ||||||| |||||||| | | |||| |||||| | ||||||||||||||||||| |
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| T |
26161798 |
agattgataaa-cctttattatacaagtttagatagaccaactcacttcacatggtggcttttgaa-ggctgcattggaacccacataagatggttcaca |
26161895 |
T |
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| Q |
150 |
gggaaaaagtgacacactggagaattcctcccagccttaatcccaagttgtttgaatataatatgattagggttccattcagatgtatcaaaatggcaaa |
249 |
Q |
| |
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|| || |||||||||| |||||| ||| ||||||| ||| || ||| || | |||| |||||||| |||||||| |||||||| || ||||| |||| |
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| T |
26161896 |
ggtaagaagtgacacattggagagttcttcccagcggtaaccctaagctgcctaaatacaatatgatctgggttccaatcagatgtgtccaaatgacaaa |
26161995 |
T |
|
| Q |
250 |
ctccaagagcttctattttatctccattctgatcactaacaagtgagactttgaacactttaatctttgtggcaatgtaatggcaatagtaaatggcata |
349 |
Q |
| |
|
||||| | |||| ||||||||||||||| ||||| |||||||||||| ||||||||| || || ||| || |||||||| ||| ||||||||||||| |
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| T |
26161996 |
ttccaacaacttccattttatctccattcgcatcaccaacaagtgagaccttgaacactctagtccctgtagctatgtaatgacaaaagtaaatggcata |
26162095 |
T |
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| Q |
350 |
tggatatgggaggggatgacaagctacccatttgggaacatcaatatcatgtgatacttc |
409 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26162096 |
tggatatgagaggggatgacaagctacccatttgggagcatcaatatcatgtgatacttc |
26162155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 202 - 408
Target Start/End: Original strand, 25928965 - 25929171
Alignment:
| Q |
202 |
tgaatataatatgattagggttccattcagatgtatcaaaatggcaaactccaagagcttctattttatctccattctgatcactaacaagtgagacttt |
301 |
Q |
| |
|
||||||| ||||||| || ||||| ||||||||||| |||||||| | ||| | |||||||||||||||||||||| ||||| ||| | |||||| || |
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| T |
25928965 |
tgaatattatatgatctggattccaatcagatgtatccaaatggcacattcctacagcttctattttatctccattcacatcaccaaccaatgagacctt |
25929064 |
T |
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| Q |
302 |
gaacactttaatctttgtggcaatgtaatggcaatagtaaatggcatatggatatgggaggggatgacaagctacccatttgggaacatcaatatcatgt |
401 |
Q |
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|||||| || | ||| || |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||| || |
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| T |
25929065 |
gaacaccctagttcctgtagctatgtaatgacaatagtaaatggcatatggatatgggaggggatggcaagatacccatttgggaacactaatgtcacgt |
25929164 |
T |
|
| Q |
402 |
gatactt |
408 |
Q |
| |
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||||||| |
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| T |
25929165 |
gatactt |
25929171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 131 - 382
Target Start/End: Complemental strand, 25649029 - 25648778
Alignment:
| Q |
131 |
ccacataagatggttcacagggaaaaagtgacacactggagaattcctcccagccttaatcccaagttgtttgaatataatatgattagggttccattca |
230 |
Q |
| |
|
||||| ||||||||| ||||| || ||||||||| ||| ||||||| |||||| ||| || | ||| ||||||| ||||| ||||||||| ||| |
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| T |
25649029 |
ccacaaaagatggtttacaggaaagaagtgacacgctgaagaattcttcccaggcttgattcttagtgtcttgaataactcatgatcagggttccagtca |
25648930 |
T |
|
| Q |
231 |
gatgtatcaaaatggcaaactccaagagcttctattttatctccattctgatcactaacaagtgagactttgaacactttaatctttgtggcaatgtaat |
330 |
Q |
| |
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|||||||| || || || | |||||||||||| |||||||||||||||| ||||| ||| | || || |||||||||||| || ||| || |||| || |
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| T |
25648929 |
gatgtatccaagtgacacattccaagagcttccattttatctccattctcatcaccaaccaaagataccttgaacactttactccctgtagctatgtgat |
25648830 |
T |
|
| Q |
331 |
ggcaatagtaaatggcatatggatatgggaggggatgacaagctacccattt |
382 |
Q |
| |
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| ||| ||||| |||||||||||||| | |||||| |||| ||||||||| |
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|
| T |
25648829 |
gacaaccgtaaacagcatatggatatggcatgggatggcaagatacccattt |
25648778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 26175213 - 26175259
Alignment:
| Q |
363 |
ggatgacaagctacccatttgggaacatcaatatcatgtgatacttc |
409 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
26175213 |
ggatgacaagctacccattagggaacatcaatatcatgtgatacttc |
26175259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 409
Target Start/End: Complemental strand, 32189799 - 32189601
Alignment:
| Q |
211 |
tatgattagggttccattcagatgtatcaaaatggcaaactccaagagcttctattttatctccattctgatcactaacaagtgagactttgaacacttt |
310 |
Q |
| |
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||||||| |||||||| |||||||||| ||||| || | |||||||||||| |||||||||||||||| || || ||| | || || ||||||||||| |
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| T |
32189799 |
tatgatttgggttccaaccagatgtatccaaatgacacattccaagagcttccattttatctccattctcattaccaaccaaagataccttgaacacttt |
32189700 |
T |
|
| Q |
311 |
aatctttgtggcaatgtaatggcaatagtaaatggcatatggatatgggaggggatgacaagctacccatttgggaacatcaatatcatgtgatacttc |
409 |
Q |
| |
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| || ||| || |||| ||| ||| ||||||||||||||||||||||| |||||| ||||| |||||||| ||| ||| ||| ||| |||||||||| |
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| T |
32189699 |
actccctgtagctatgtgatgacaaccgtaaatggcatatggatatgggatgggatggcaagcaacccattttggagcattaatgtcaggtgatacttc |
32189601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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