View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7267_low_7 (Length: 296)
Name: NF7267_low_7
Description: NF7267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7267_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 48056721 - 48056915
Alignment:
| Q |
25 |
gttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaacaacatcaatgaaaggaaa |
124 |
Q |
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| T |
48056721 |
gttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaacaacatcaatgaaaggaaa |
48056820 |
T |
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| Q |
125 |
gtacaagcacatcctgaacaaagataaaattttgaaatcaaaggatcacaatagcttggctagacacactacacagtacttacatcttttctgtc |
219 |
Q |
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| T |
48056821 |
gtacaagcacatcctgaacaaatataaaattttgaaatcaaaggatcacaatagcttggctagacacactacacagtacttacatcttttctgtc |
48056915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 48056944 - 48057013
Alignment:
| Q |
216 |
tgtcaatcttattaccaagaaccagaagctgaatcacatttaaagatgcttaacagatgatggagttcat |
285 |
Q |
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| T |
48056944 |
tgtcaatcttattaccaagaaccagaagctgaatcacatttaaagatgcttaacaaatgatggagttcat |
48057013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 48043503 - 48043591
Alignment:
| Q |
25 |
gttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaacaacatca |
113 |
Q |
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| T |
48043503 |
gttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatca |
48043591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 48037459 - 48037523
Alignment:
| Q |
25 |
gttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtc |
89 |
Q |
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| T |
48037459 |
gttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattgatggattccagtc |
48037523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 48051488 - 48051619
Alignment:
| Q |
44 |
gagatcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaacaacatca-atgaaaggaaagtacaagcacatcctga- |
141 |
Q |
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| T |
48051488 |
gagatcatgatgtaacaaacttccttcccatatattgatttcagtcccctgcacatgtgaaacaacatcatatgaaaggcaagtacggacacatcctgat |
48051587 |
T |
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| Q |
142 |
acaaagataaaattttgaaatcaaaggatcaca |
174 |
Q |
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| T |
48051588 |
taaaagctaaaa-tttgaaatcataggatcaca |
48051619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 48045418 - 48045460
Alignment:
| Q |
144 |
aaagataaaattttgaaatcaaaggatcacaatagcttggcta |
186 |
Q |
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| T |
48045418 |
aaagctaaaatttagaaatcaaaggatcacaatagcttggcta |
48045460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 5317102 - 5317164
Alignment:
| Q |
25 |
gttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcag |
87 |
Q |
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| T |
5317102 |
gttggttgagtttttgcatgagatcatgaagcaacaaacttctctatcagtaattgatttcag |
5317164 |
T |
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