View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7268_high_1 (Length: 765)

Name: NF7268_high_1
Description: NF7268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7268_high_1
NF7268_high_1
[»] chr4 (1 HSPs)
chr4 (36-745)||(2110335-2111061)


Alignment Details
Target: chr4 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 36 - 745
Target Start/End: Complemental strand, 2111061 - 2110335
Alignment:
Q  36 aattgattatccatttactttttgttagggaaagttgatgctttttgttggggtgaaactgaaactgttcagaccaaaattaaaccnnnnnnn-gggtga 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        ||||||    
T  2111061 aattgattatccatttactttttgttagggaaagttgatgctttttgttgcggtgaaactgaaactgttcagaccaaaattaaaccttttttttgggtga 2110962  T
Q  135 ggatgggatagggatcctctcattttttcaaaagaaatggagggtttcattactaatgtttcaggaattaagtgtataaacgtccaattatctcaagtgt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2110961 ggatgggatagggatcctctcattttttcaaaagaaatggagggtttcattactaatgtttcaggaattaagtgtataaacgtccaattatctcaagtgt 2110862  T
Q  235 atgtcaccatttttagaagtagaagcctttaaccaaatatttatttattttagtaatggaaaggatccctacccgtggatagaggtgggaaaacccgacc 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2110861 atgtcaccatttttagaagtagaagcctttaaccaaatatttatttattttagtaatggaaaggatctctacccgtggatagaggtgggaaaacccgacc 2110762  T
Q  335 catcagggatgggagaacgatatctattnnnnnnnnnnnncaacggcgatttggggcatgttcgggtatttttcagggagtttgt-----cctct----- 424  Q
    ||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||      | | |         
T  2110761 catcagggatgggagaacgatatctatttctctctctctccaacggcgatttggggcatgttcgggtatttttcagggagtttggagggacatgtagggc 2110662  T
Q  425 ------cgtccacgccccattgctatgccttctcgagtgttttgtcctcttttaaaacaaaacatcatcaaatcaaagtacatcaatttatgcaattaca 518  Q
          || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2110661 aaaatccggccacgccccattgctatgccttctcgagtgttttgttctcttttaaaacaaaacatcatcaaatcaaagtacatcaatttatgcaattaca 2110562  T
Q  519 gtaatgnnnnnnncattattgctgacttattgggtttgagtttttctttgttatttaggttttgaacaatcaaattcatggctttgggaatagtcactaa 618  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2110561 gtaatgtttttttcattattgctgacttattgggtttgagtttttctttgttatttaggttttgaacaatcaaattcatggctttgggaatagtcactaa 2110462  T
Q  619 aaggttggggaataaattttttccagcattatcttccacttccaggcttctacattctcatgccaccagtttcggttagttgcattcaaatttacatttt 718  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2110461 aaggttggggaataaactttttccagcattatcttccacttccaggcttctacattctcatgccaccagtttcggttagttgcattcaaatttacatttt 2110362  T
Q  719 ttagttaaaacaaataacattaacctg 745  Q
    |||||||||||||||||||||||||||    
T  2110361 ttagttaaaacaaataacattaacctg 2110335  T

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