View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7268_low_2 (Length: 299)
Name: NF7268_low_2
Description: NF7268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7268_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 7555019 - 7554732
Alignment:
| Q |
13 |
attactacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcagg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7555019 |
attactacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagctgg |
7554920 |
T |
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| Q |
113 |
catttttt-cagctctccatgagagaccaacattgaggtctttatcctttaccgatcacgaatcaagaaacttcgcaacgctgtttgcactcattaagaa |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7554919 |
catttttttcagctctccatgagagaccaacattgaggtctttatcctttaccgatcacgaatcaagaaacttcgcaacgctgtttgcactcgttaagaa |
7554820 |
T |
|
| Q |
212 |
ctatccttcacttagtgagattaaactggaatacacatatttcacaaaaaataatatggagaagtcttattctttgatggattttgtt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7554819 |
ctatccttcacttagtgagattaaactggaatacacatatttcacaaaaaataatatggagaattcttattctttgatggattttgtt |
7554732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 9411948 - 9411801
Alignment:
| Q |
16 |
actacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcat |
115 |
Q |
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| T |
9411948 |
actacatcaacgacacatcactcttcaacttgtttaagaactgtaagcttctccaagaggttatcatgtttcgctgtcgtagcataaccaaagttggcat |
9411849 |
T |
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| Q |
116 |
tttttcagctctccatgagagaccaacattgaggtctttatcctttac |
163 |
Q |
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| |||| |||||| |||||||||||| ||||||||||| |||||||| |
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| T |
9411848 |
tgtttctgctctctgtgagagaccaaccttgaggtctttgtcctttac |
9411801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 6588601 - 6588657
Alignment:
| Q |
100 |
taaccaaagcaggcattttttcagctctccatgagagaccaacattgaggtctttat |
156 |
Q |
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| T |
6588601 |
taaccaatgcaggcattgcttctgctctccgtgagagaccaaaattgacgtctttat |
6588657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 9411752 - 9411716
Alignment:
| Q |
209 |
gaactatccttcacttagtgagattaaactggaatac |
245 |
Q |
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| T |
9411752 |
gaactatcctttacttagtgagattaaaatggaatac |
9411716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 8186594 - 8186745
Alignment:
| Q |
16 |
actacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcat |
115 |
Q |
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|||| |||||||||| || ||| |||||||||| ||||| || |||| |||| ||||||||||||||||| ||||| | |||||||||||||||| |
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| T |
8186594 |
actatatcaacgacaaattgctttttcacttgttaaagaattgtaagcatctcgaagaggttatcatgtttaagtgttctcagttaaccaaagcaggcat |
8186693 |
T |
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| Q |
116 |
tttttcagctctccatgagagaccaacattgaggtctttatcctttaccgat |
167 |
Q |
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| ||| || || ||||||||||| |||||||||||||||||||||||| |
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| T |
8186694 |
tgcttctgccctatgggagagaccaacgttgaggtctttatcctttaccgat |
8186745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 21833568 - 21833687
Alignment:
| Q |
42 |
cacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaa |
141 |
Q |
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|||||| | ||||| || |||||||| ||||||| ||||||||||| |||||| |||| || || ||||||| ||||||||||| ||||||||||| |
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| T |
21833568 |
cacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtgatcaaataagcagagaaggcattgcttcagctctccgtgagagaccaa |
21833667 |
T |
|
| Q |
142 |
cattgaggtctttatccttt |
161 |
Q |
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||||||| |||||||||||| |
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| T |
21833668 |
cattgagttctttatccttt |
21833687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 1601300 - 1601179
Alignment:
| Q |
43 |
acttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttt---tcagctctccatgagagacc |
139 |
Q |
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||||||||||||||| ||||| ||| ||||||| |||||| | || ||| |||| |||||| | || | |||| || || ||||||| ||||||||| |
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| T |
1601300 |
acttgtttaagaacttcaagcatcttgaagaggtcatcatgctcgactgttatggaataaccgatgctgacattgttgcttctgctctccgtgagagacc |
1601201 |
T |
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| Q |
140 |
aacattgaggtctttatccttt |
161 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
1601200 |
aacattgaggtctttatccttt |
1601179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 7225501 - 7225534
Alignment:
| Q |
131 |
tgagagaccaacattgaggtctttatcctttacc |
164 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
7225501 |
tgagagaccaacattgaggtctttatcctttacc |
7225534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 8183638 - 8183670
Alignment:
| Q |
131 |
tgagagaccaacattgaggtctttatcctttac |
163 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
8183638 |
tgagagaccaacattgaggtctttatcctttac |
8183670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 7308349 - 7308230
Alignment:
| Q |
42 |
cacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaa |
141 |
Q |
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|
|||||||||||||| || |||||||| |||||| ||||| || || ||| || ||||||| ||||||||| | | ||||| ||||||||||||| |
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| T |
7308349 |
cacttgtttaagaattgtaagcttctggaagaggccatcatattagactgtcatcaactaaccaacgcaggcattgctactgctctacatgagagaccaa |
7308250 |
T |
|
| Q |
142 |
cattgaggtctttatccttt |
161 |
Q |
| |
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||||| | |||||||||||| |
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| T |
7308249 |
cattgcgctctttatccttt |
7308230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 513939 - 514063
Alignment:
| Q |
42 |
cacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaa |
141 |
Q |
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|||||||| || ||||| |||||||| |||||||||||||| ||| | || ||| ||||||||||| ||| ||| ||| ||||||| ||||||||||| |
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| T |
513939 |
cacttgttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgcataaccaaacaaggtattgcttctgctctccgtgagagaccaa |
514038 |
T |
|
| Q |
142 |
cattgaggtctttatcctttaccga |
166 |
Q |
| |
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|||||| ||| |||||||| |||| |
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| T |
514039 |
cattgacctctatatccttttccga |
514063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 51763672 - 51763779
Alignment:
| Q |
54 |
aactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaacattgaggtctt |
153 |
Q |
| |
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||||| |||||||||||||| || ||||||||||| |||||| |||||||| ||||| | ||| ||||||| ||| ||||||||||||| ||||| |
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| T |
51763672 |
aactgtaagcttctccaagatgtcatcatgtttgactgtgatcaaataaccaatgcaggagtcacttctgctctccgtgaaagaccaacattgacgtctt |
51763771 |
T |
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| Q |
154 |
tatccttt |
161 |
Q |
| |
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|||||||| |
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|
| T |
51763772 |
tatccttt |
51763779 |
T |
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