View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7269_low_1 (Length: 457)
Name: NF7269_low_1
Description: NF7269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7269_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 7947601 - 7947171
Alignment:
| Q |
8 |
cgaagaatatgttctgttacagaagtagattatgaaagtaatcaattcaacagaattcctggttacagctacaagatcctcagggatgatatcaacaact |
107 |
Q |
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| T |
7947601 |
cgaaaaatatgttctgttacagaagtagattatgaaagtaatcaattcaacagaattcctggttacagctacaagatcctcagggatgatatcaacaact |
7947502 |
T |
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| Q |
108 |
ttcacctctaagcgggatctgatctactgcaatagaaaaagaatgtgtttacatgtattaattgatctcggccattgatttcagatcagtcggcatacat |
207 |
Q |
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| T |
7947501 |
ttcacctctaagcgggatccgatctactgcaatagaaaaagcatgtgtttacatgtattaattgatctcggtcattgatttcagatcagtcggcatacat |
7947402 |
T |
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| Q |
208 |
tacacctttactaaatttaaattattgttatataatcttcattgttgatctgatattggaaggccaaaatcagtaaccatgtgacacatttacttcgtcg |
307 |
Q |
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| T |
7947401 |
tacacctttactaaatttaaattattgttatataatcttcattgttgatctgatattggaaggccaaaatcagtaactatgtgacacatttacttcgtcg |
7947302 |
T |
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| Q |
308 |
aatctgagtccttttaagtaactttctttttaagtttcttgatttagcctgcactagcttgttctgagggatcaaaacttgcatgtttgcagcatcttca |
407 |
Q |
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| T |
7947301 |
aatccaagtccttttaagtaactttctttttaattttcttgatttagcctgcactagcttgttctgagggatcaaaacttgcatgtttgcagcatcttca |
7947202 |
T |
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| Q |
408 |
ttttaattttcacattttgttgctatacttg |
438 |
Q |
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| T |
7947201 |
ttttaattttcacattttgttgctatacttg |
7947171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 33975330 - 33975271
Alignment:
| Q |
164 |
attaattgatctcggccattgatttcagatcagtcggcatacattacacctttactaaat |
223 |
Q |
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| T |
33975330 |
attaatttatttcggccattgatttgaggtcagtcggctcacattacaccttcactaaat |
33975271 |
T |
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