View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7269_low_3 (Length: 246)
Name: NF7269_low_3
Description: NF7269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7269_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 15554040 - 15553809
Alignment:
| Q |
8 |
acatcatcatcctcatccaacccttttcaacctacacaatgttcgtcatttgtgttagacaatttgtctcaacattgacatggtgaactcccctcactca |
107 |
Q |
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| T |
15554040 |
acatcatcatcctcatccaacccttttcaacctacacaatgttcgtcatttgtgttagacaatttgtctcaacgttgacatggtgaactcccctcactca |
15553941 |
T |
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| Q |
108 |
acctgaactaaacctacaaacaacctctgaaacatttcttgacattgttgtttcagaaatccaacaacaacctttacctgcactacaaatagcctcttaa |
207 |
Q |
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| T |
15553940 |
acctgaattaaacctacaaacaacctctgaaacatttcttgacattgttgtttcagaaatccaacaacaacctttacatgcactacaaatagcctcttaa |
15553841 |
T |
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| Q |
208 |
attataatttgttacaataatattgatgatgt |
239 |
Q |
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| T |
15553840 |
attataatttgttacaataatattgatgatgt |
15553809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 15649638 - 15649415
Alignment:
| Q |
16 |
atcctcatccaacccttttcaacctacacaatgttcgtcatttgtgttagacaatttgtctcaacattgacatggtgaactcccctcactcaacctgaac |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||| ||||||||| |
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| T |
15649638 |
atcctcatccaaccctttccaacctacacaatgttcgtcatttgtgttagaaaatttgtctcaagatttacatggtgaaatcccctcacttaacctgaac |
15649539 |
T |
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| Q |
116 |
taaacctacaaacaacctctgaaacatttcttgacattgttgtttcagaaatccaacaacaacctttacctgcactacaaatagcctcttaaattataat |
215 |
Q |
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| T |
15649538 |
taaacctacaaacaacctcttaaacatttcctaacattgttgtttcagaaatccaacaacaacctttacctgcactacaaatagcctctttaactataat |
15649439 |
T |
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| Q |
216 |
ttgttacaataatattgatgatgt |
239 |
Q |
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| T |
15649438 |
tcgttacaataatattgatgatgt |
15649415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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