View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7270_low_3 (Length: 617)
Name: NF7270_low_3
Description: NF7270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7270_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 155 - 568
Target Start/End: Original strand, 2605592 - 2606005
Alignment:
| Q |
155 |
caatcccttatattatagtttcacaagataaagcacattgaagctattaaccaagaaaaagttcttagtagtgatttatctttctcagctgcttattgat |
254 |
Q |
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| T |
2605592 |
caatcccttatattatagtttcacaagataaagcatattgaagctattaaccaagaaaaagttcttagtagtgatttatctttctcagctgcttattgat |
2605691 |
T |
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| Q |
255 |
acatttctgatgtcattgtatttgatctttacagctctacctatatcatctctatttccttacctatatttcatggtaagtttaataactttaatttatc |
354 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
2605692 |
acatttctgatgtcattgtatttgatcttttcagctctacctatatcatctctatttccttacctatatttcatggtaagtttaataacttaaattcatc |
2605791 |
T |
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| Q |
355 |
atagtacatattttaattttgtgacatcattatttcttggaagtttctctgacacaataggtgaatgcatttttgttatctaaagtttgctacattttgg |
454 |
Q |
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| T |
2605792 |
atagtacatattttaattttgtgacatcattatttcttggaagtttctctgacacaataggtgaatgcatttttgttatctaaagtttgctacattttgg |
2605891 |
T |
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| Q |
455 |
ctaaagtattccaacatttaatgtgaacagtatttttatttagataagagatttcaatattgcaaaaagagaggaggacataagtgcttatgcaggttat |
554 |
Q |
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| T |
2605892 |
ctaaagtattccaacatttaatgtgaacagtatttttatttagataagagatttcaatattgcaaaaagagaggaggacataagtgcttatgcaggttat |
2605991 |
T |
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| Q |
555 |
gtgggtaagattga |
568 |
Q |
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| T |
2605992 |
gtgggtaagattga |
2606005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 2605310 - 2605445
Alignment:
| Q |
20 |
ggagagacattgttgaagaaaaagtactatgagaattgtcctggttgtaaagttgacaaagcaaaagagctcaaaactgatgtttcatttcgaaatctct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2605310 |
ggagagacattgttgaagaaaaagtactatgagaattgtcctggttgtaaagttgacaaagcaaaagagctcaaaactgatgtttcatttcgaaatctct |
2605409 |
T |
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| Q |
120 |
tgaacatatggatggtggttttatgcagctgtaagc |
155 |
Q |
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| T |
2605410 |
tgaacatatggatggtggttttatgcagctgtaagc |
2605445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 39160175 - 39160265
Alignment:
| Q |
27 |
cattgttgaagaaaaagtactatgagaattgtcctggttgtaaagttgacaaagcaaaagagctcaaaactgatgtttcatttcgaaatct |
117 |
Q |
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| T |
39160175 |
cattgttgaagaaaaagtattatgagaactgccctggttgtaaggttgatcaagccaaagagcttggaacagatgtttcacttcgaaatct |
39160265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 566
Target Start/End: Original strand, 39160568 - 39160630
Alignment:
| Q |
504 |
gatttcaatattgcaaaaagagaggaggacataagtgcttatgcaggttatgtgggtaagatt |
566 |
Q |
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| T |
39160568 |
gatttcaatattgcagaaagcgaggaagatataagcgcttatgctggttatgtaggtaagatt |
39160630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 2620201 - 2620249
Alignment:
| Q |
283 |
ttacagctctacctatatcatctctatttccttacctatatttcatggt |
331 |
Q |
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| T |
2620201 |
ttacagctcttcctatagcatctttatttccatacctctatttcatggt |
2620249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 4e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 26371823 - 26371688
Alignment:
| Q |
20 |
ggagagacattgttgaagaaaaagtactatgagaattgtcctggttgtaaagttgacaaagcaaaagagctcaaaactgatgtttcatttcgaaatctct |
119 |
Q |
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||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26371823 |
ggagagacattgttgaaaaaacaatattatgagaattgtcctggttgtaaagttgacaaagcaaaagagctcaaaactgatgtttcatttcgaaatctct |
26371724 |
T |
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| Q |
120 |
tgaacatatggatggtggttttatgcagctgtaagc |
155 |
Q |
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| T |
26371723 |
tgaacatatggatggtggttttatgcagctgtaagc |
26371688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 426 - 566
Target Start/End: Complemental strand, 26371461 - 26371322
Alignment:
| Q |
426 |
tttgttatctaaagtttgctacattttggctaaagtattccaacatttaatgtgaacagtatttttatttagataagagatttcaatattgcaaaaagag |
525 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | |
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| T |
26371461 |
tttgttatctaaagtt-gctacattttggctaaggtattccaacatttaatgtgaacagtatttttatttagattagagatttcaatattgcagaaaggg |
26371363 |
T |
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| Q |
526 |
aggaggacataagtgcttatgcaggttatgtgggtaagatt |
566 |
Q |
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| T |
26371362 |
aagaggacataagtgcttatgctggttatatgggtaagatt |
26371322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 260 - 396
Target Start/End: Complemental strand, 26371605 - 26371469
Alignment:
| Q |
260 |
tctgatgtcattgtatttgatctttacagctctacctatatcatctctatttccttacctatatttcatggtaagtttaataactttaatttatcatagt |
359 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
26371605 |
tctgatgtcattgtatttgtgctttacagctctgcctatatcatctctctttccttaccaatatttcatggtaagtttaataactttaattcatcatagt |
26371506 |
T |
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| Q |
360 |
acatattttaattttgtgacatcattatttcttggaa |
396 |
Q |
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| T |
26371505 |
atatattttaattttgtgacattattatttcttggaa |
26371469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 566
Target Start/End: Original strand, 31828291 - 31828347
Alignment:
| Q |
510 |
aatattgcaaaaagagaggaggacataagtgcttatgcaggttatgtgggtaagatt |
566 |
Q |
| |
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|||||||||||||| ||||| || |||||||| ||||| | |||||||||||||||| |
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|
| T |
31828291 |
aatattgcaaaaagtgaggaagatataagtgcctatgctgattatgtgggtaagatt |
31828347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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