View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7270_low_5 (Length: 236)
Name: NF7270_low_5
Description: NF7270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7270_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 53721433 - 53721655
Alignment:
| Q |
1 |
cctctttgttttgactgcccttcacttttattatcctttgtttttggcaataccttttacttcttttacattagtaataatgacatgtgtccatcccctt |
100 |
Q |
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| T |
53721433 |
cctctttgttttgactgcccttcacttttattatcctttgtttttggcaataccttttacttcttttacattagtaataatgacacgtgtccatcccctt |
53721532 |
T |
|
| Q |
101 |
agtgtcgctcggatggtaaaagaccgcaaca-gttcgaactcgcaatacacgttttctctgcatttcgtgagtgagtttcatcgttggacttattcaaac |
199 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
53721533 |
agtgtcgctcggatggtaaaagaccgcaacaggttcgaactcgcaatacacgttttctctgcatttcgtgactgagtttcatcattggacttattcaaat |
53721632 |
T |
|
| Q |
200 |
taacaaaatttacatatgttaaa |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
53721633 |
taacaaaatttacatatgttaaa |
53721655 |
T |
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