View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7270_low_6 (Length: 204)
Name: NF7270_low_6
Description: NF7270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7270_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 14241804 - 14241977
Alignment:
| Q |
20 |
gttggagacagaggaaatcatagtttgagaaatttgtcggaggacagaagggtaagatataataaggcggagatctatataaattggtgaggagatgccg |
119 |
Q |
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| T |
14241804 |
gttggagacagaggaaatcatagtttgagaaatttgtcggaggacagaagggtaagatataataaggcggaggtctatataaattggtgaggagatgccg |
14241903 |
T |
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| Q |
120 |
gatttaagcttgaagttaccaaatttgacagctgagatttcatggagttgaagaactaaagactccattgatgt |
193 |
Q |
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| T |
14241904 |
gatttaagcttgaagtttccaaatttgacagctgagatttcatggagtttaagaactaaagactccattgatgt |
14241977 |
T |
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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 5032487 - 5032357
Alignment:
| Q |
45 |
tgagaaatttgtcggaggacagaagggtaagatataataaggcggagatctatataaattggtgaggagatgccggatttaagcttgaagttaccaaatt |
144 |
Q |
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| T |
5032487 |
tgagagatttgctggaggagagaaggataagaaattatgagacggaggtcaatgtagattggtgaggagatgccagatttgagcttgaagttgccgaatt |
5032388 |
T |
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| Q |
145 |
tgacagctgagatttcatggagttgaagaac |
175 |
Q |
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| T |
5032387 |
tcacagctgatatctcatggagttgaagaac |
5032357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 7990652 - 7990537
Alignment:
| Q |
60 |
aggacagaagggtaagatataataaggcggagatctatataaattggtgaggagatgccggatttaagcttgaagttaccaaatttgacagctgagattt |
159 |
Q |
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| T |
7990652 |
aggagagaaggataagatatgatgagacggaggtcaatgtagatcggtgaggtgatgccagatttgagcttgaagttgccgaatttcacagctgatatct |
7990553 |
T |
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| Q |
160 |
catggagttgaagaac |
175 |
Q |
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| T |
7990552 |
catggagttgaagaac |
7990537 |
T |
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