View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7271_low_2 (Length: 257)
Name: NF7271_low_2
Description: NF7271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7271_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 41507590 - 41507712
Alignment:
| Q |
128 |
gctaccatgtactagcatttcctagagaaaagctccaaaagagtacatatttcttttatcaacaggtgaaaaatcattcacatgctttattctctaatta |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41507590 |
gctaccatgtactagcatttcctagagaaaagctccaaaagagtacatatttcttttatcaacaggtgaaaaatcattcacatgctttattctctaatta |
41507689 |
T |
|
| Q |
228 |
ttctcccttaaacacctatgcta |
250 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
41507690 |
ttctcccttaaacaactatgcta |
41507712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 41502437 - 41502531
Alignment:
| Q |
155 |
aaaagctccaaaagagtacatatttcttttatcaacaggtgaaaaatcattcacatgctttattctctaattattctcccttaaacacctatgcta |
250 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
41502437 |
aaaagctccaaa-gtgtacatatttctttcatcaacaggtgaataatcattcacaccctttattctctaattattctcccttaaataactatgcta |
41502531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 41507480 - 41507523
Alignment:
| Q |
18 |
agaagaaatggaaagaaaccctaaaaattttacactttaggcta |
61 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
41507480 |
agaagaaatggaaagaaaacctaaaaaatttacactttaggcta |
41507523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University