View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7272_high_1 (Length: 338)
Name: NF7272_high_1
Description: NF7272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7272_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 4033595 - 4033281
Alignment:
| Q |
19 |
attctatctatggagtctacttcaatcaactaacaaagaaggagacaaagtcattcaaatacggacaaattttagctttatgtcctttattagtttattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4033595 |
attctatctatggagtctacttcaatcaactaacaaagaaggagacaaagtcattcaaatacggacaaatttgagctttatgtcctttattagtttattt |
4033496 |
T |
|
| Q |
119 |
agttttctatgatatcaccccattgatattaactaatttaacaccacttcctacataagcaatctattttgtcaatgtttgatcataagtcttaatcaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4033495 |
agttttctatgatatcaccccattgatattaactaatttaacaccacttcctacataagcaatctattttgtcaatgtttgatcataagtcttaatcaca |
4033396 |
T |
|
| Q |
219 |
aaaaggtgtctgtgatacaagtaggaaaataattgaaggaattaaataattttcaaatactattagaactattcttgccaacaaatccctcaaaagagtg |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4033395 |
aaaaggtgtctatgatacaagtaggaaaataattgaaggaatcaaataattttcaaatactattagaactattcttgccaacaaatccctcaaaagagtg |
4033296 |
T |
|
| Q |
319 |
tgctttcttctctct |
333 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4033295 |
tgctttcttctctct |
4033281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University